Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66150 756 / 0 TMK1 transmembrane kinase 1 (.1) AT2G01820 518 / 2e-169 CYCJ18 Leucine-rich repeat protein kinase family protein (.1) AT3G23750 466 / 1e-149 Leucine-rich repeat protein kinase family protein (.1) AT1G24650 460 / 9e-148 Leucine-rich repeat protein kinase family protein (.1) AT1G70460 245 / 2e-69 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT3G20530 232 / 4e-68 Protein kinase superfamily protein (.1) AT1G23540 240 / 1e-67 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT1G20650 231 / 1e-67 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT2G17220 231 / 2e-67 Kin3 kinase 3, Protein kinase superfamily protein (.1.2) AT1G76370 230 / 3e-67 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021275 [exp] 1628 / 0 AT1G66150 804 / 0.0 transmembrane kinase 1 (.1) Lus10039038 [exp] 754 / 0 AT1G66150 1356 / 0.0 transmembrane kinase 1 (.1) Lus10027336 [exp] 744 / 0 AT1G66150 1348 / 0.0 transmembrane kinase 1 (.1) Lus10031944 [exp] 514 / 2e-167 AT2G01820 1008 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019131 [exp] 488 / 5e-158 AT1G66150 981 / 0.0 transmembrane kinase 1 (.1) Lus10034432 [exp] 484 / 2e-156 AT1G66150 979 / 0.0 transmembrane kinase 1 (.1) Lus10003807 [exp] 474 / 4e-152 AT1G66150 1221 / 0.0 transmembrane kinase 1 (.1) Lus10010472 [exp] 458 / 2e-147 AT1G66150 1067 / 0.0 transmembrane kinase 1 (.1) Lus10001851 [exp] 453 / 2e-144 AT2G01820 693 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G203500 [exp] 696 / 0 AT2G01820 528 / 5e-173 Leucine-rich repeat protein kinase family protein (.1) Potri.016G070500 [exp] 676 / 0 AT1G66150 778 / 0.0 transmembrane kinase 1 (.1) Potri.001G217700 [exp] 601 / 0 AT1G66150 724 / 0.0 transmembrane kinase 1 (.1) Potri.009G020400 [exp] 589 / 0 AT1G66150 511 / 5e-166 transmembrane kinase 1 (.1) Potri.004G084000 [exp] 539 / 2e-177 AT1G66150 730 / 0.0 transmembrane kinase 1 (.1) Potri.017G134900 [exp] 537 / 1e-176 AT1G66150 1333 / 0.0 transmembrane kinase 1 (.1) Potri.010G103000 [exp] 527 / 7e-173 AT2G01820 1050 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G137801 [exp] 518 / 1e-169 AT1G66150 1101 / 0.0 transmembrane kinase 1 (.1) Potri.018G141000 [exp] 473 / 3e-152 AT3G23750 650 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G073900 [exp] 462 / 3e-148 AT3G23750 630 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0016 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10016952 pacid=23172941 polypeptide=Lus10016952 locus=Lus10016952.g ID=Lus10016952.BGIv1.0 annot-version=v1.0 ATGGGGAGTTATCGTCTGAAAATCTTGATACCCTTCTTCTTATTCTTCTTCTGCTTCGTTAAAGTGGTCTTCAGCGTTACAGACCCCGGGGATTTCGCTG TTCTGAAAGAATTCAGAGATGGGTTGGATAATCCAGAGCTCTTGGAATGGCCCACAGGTGGCGACGATCCTTGTGGCCAGTCTTGGAAGCACGTGTTCTG CCACGGTTCAAGAATCTCCCAGATTCAAGTTCAGAACATGAGCTTGAAGGGAACTTTGCCTAAGGACTTCAACAAGCTTGGCATGCTCGAAAATCTGGGG CTTCAGAGGAACCAATTTAGTGGTTCTTTGCCATCTTTCAACGGCTTGTCCAAGTTGAGGTATGCTTTCTTGGATTACAACCTGTTCGATTCCATTCCAA TGGATTTCTTTGATGGTCTGGATAGTTTGGAAGTCCTGGCATTGGATAGCAACGATTTTAATGCCACTACTGGGTGGTCTTTCCCCAAGGGTTTGCAAAG TTCTGCACAGTTGACTAATCTTTCTTGTATGCGTTGCAATTTGGTGGGTCCGTTGCCTGATTTCCTGGGGAGCTTTGTGTCCTTGCAAAACTTGTTGCTT TCGCGCAACAGTCTGTCTGGTGAGCTACCTGCAAGCTTCAAGGACAACACTGCTCTGCAAAGGCTGTGGTTGAATAACCAGGAAGGCGGTGGATTGACCG GTTCGATCGATGTGGTAGCAATGATGGAATCTGCTATTGTTCTATGGCTTCATGGAAATCAGTTCACAGGTGCAATCCCTGACAGCATTGGCAATTTAAC CGGCTTGAGGGATCTCAATCTCAATGGTAATAAACTTGTTGGGTTGGTTCCTGCAAGCTTAGCAGATTTGCCCTTGCAGAATTTGGATCTCGGCAATAAT CAGCTAATGGGGCCGATTCCAAATTTCAAAGCCGCTAAAGTTTCATTGACTACGAATGCATTTTGCCAGTCTACCGCGGGAGTTCCATGCGCTTCTGAAG TTATGTCACTGATAGAGTTCCTTGCCGGGGTGAATTACCCTTCCAGGCTGGTGTCTTCATGGACCGGTAATGATCCATGTTCATCATGGCTAGGTGTTCG TTGTGATCCCAGTGGGAAAGTTGATTCTATTGTTTTGCCTAATTACAATCTCAGTGGAACTTTAAGTCCTTCAGTTGGTAAGCTTACTTCTCTGTCCATA ATCAGACTGGAAAGTAACAATATAACAGGTACAGTACCAGCAAATTGGACAAGCTTACCATCTCTGAACACCGTGGATCTTAGTAGCAACAATATTGCAC CTCCATTGCCTAACTTCTCTACCAAGGTCCATTTCGTTACAACAGGGAACCCTTTGTTGACAGGTGGTGGAAACAGTCCTCCAGGCAGCACCCCATCCTC TCCCAAGGGCAATGGAGGTGCGCCCTCTGGTAATAATGGAGCTTCTCCCGAGAGAAATGGTCCTAAAAGTTCCATTCTTGTTGCGGTTTTGGCTCCGGTT ATAAGTGTAGCTGTTGTGGCCATTCTAGCTATCCCACTATTCCTCTATTGTTACAAGAAGAGGAACGGAGGTATGTCCCAGGCTACGAATTCCCTAGTCA TTCATCCAAGAGATCCATCTGACTTGGACAACTCAGTCAAGATTGCTGTTGCCAACAATGCTGCTGGACCCTCTTCCGCCAGAGCAGCTATTGGTGGACT TGGCGAGTCTCATGCTACCATTGAAGCAGGGAACCTCGTAATATCAGTTCAAGTTCTTCGAAATGTAACGAGAAATTTCGCCTCGGAAAACGAGCTAGGC CGTGGTGGGTTTGGAGTTGTTTATAAGGGAGAACTTGAAGATGGAACCACTATAGCTGTGAAGAGAATGGAGTCTGGTGTTGTTCGAAGTAAAGCCGTGG ATGAGTTCCGGTCAGAGATTGCAGTTCTTTCCAAGGTCAGACACCGACATTTAGTATCGCTAACAGGCTACTGCTTTGAAGGCAGCGAAAGAATCCTTGT GTATGAGTATATGCCTCAAGGAGCTCTCAGCAGACATCTTTTCCATTGGAAGAGGTTTCAGTTGGAGCCACTTTCTTGGAAAAGGAGGCTTAATATCGCC CTGGACGTTGCTAGAGGAATGGAGTATCTACATACTCTTGCTCATCAGAGCTTCATACACAGGGACCTCAAATCTTCAAACATCTTACTTGGTGATGATT TCAGAGCCAAAGTTTCAGACTTTGGACTCGTACGACTTGCGCCCAATGGTGAGAAATCCATCGAAACCAAGCTTGCTGGAACGTTTGGATACTTGGCACC TGAATATGCTGAGACGGGGAAAATCACAACCAAGGTTGATGTGTTTAGTTTTGGGGTGGTCTTGATCGAGATGTTAACTGGATTAGTGGCTCTCGATGAA GGCAGGCCAGAAGAAAAGCAGCATCTAGCTACATGGTTCCGGAAGGTGTACTTGGATAAGGAAATGCCTAAGGGTGCCATCGACTCTGAACTCGAAGTGA ACAAAGATACGTTGGAGAGCATCTCAACGATCGCGGATCTTGCATGGCACTGCACTGCAAGGGATCATGGTCAAAGACCAGAAATGGGGTATGCAGTGAA TGTGCTTGCTCCGCTAGTCGAGAAATGGAAGCCCATGGACGATGATCCTGAAGACTACTGTGGCATTGACTACAGTCTCCCACTAAACCAGATGGTTAAA GGCTGGCAAGAGGCGGAAGGAAAAGACTTGAGCTATGTGGACTTGGAAGACAGCAAAGGAAGTATCCCGGCTAGGCCAACCGGTTTCGCAGATTCTTTCA CTTCTGCAGATGGTCGATGA
AA sequence Show only first row Show all	>Lus10016952 pacid=23172941 polypeptide=Lus10016952 locus=Lus10016952.g ID=Lus10016952.BGIv1.0 annot-version=v1.0 MGSYRLKILIPFFLFFFCFVKVVFSVTDPGDFAVLKEFRDGLDNPELLEWPTGGDDPCGQSWKHVFCHGSRISQIQVQNMSLKGTLPKDFNKLGMLENLG LQRNQFSGSLPSFNGLSKLRYAFLDYNLFDSIPMDFFDGLDSLEVLALDSNDFNATTGWSFPKGLQSSAQLTNLSCMRCNLVGPLPDFLGSFVSLQNLLL SRNSLSGELPASFKDNTALQRLWLNNQEGGGLTGSIDVVAMMESAIVLWLHGNQFTGAIPDSIGNLTGLRDLNLNGNKLVGLVPASLADLPLQNLDLGNN QLMGPIPNFKAAKVSLTTNAFCQSTAGVPCASEVMSLIEFLAGVNYPSRLVSSWTGNDPCSSWLGVRCDPSGKVDSIVLPNYNLSGTLSPSVGKLTSLSI IRLESNNITGTVPANWTSLPSLNTVDLSSNNIAPPLPNFSTKVHFVTTGNPLLTGGGNSPPGSTPSSPKGNGGAPSGNNGASPERNGPKSSILVAVLAPV ISVAVVAILAIPLFLYCYKKRNGGMSQATNSLVIHPRDPSDLDNSVKIAVANNAAGPSSARAAIGGLGESHATIEAGNLVISVQVLRNVTRNFASENELG RGGFGVVYKGELEDGTTIAVKRMESGVVRSKAVDEFRSEIAVLSKVRHRHLVSLTGYCFEGSERILVYEYMPQGALSRHLFHWKRFQLEPLSWKRRLNIA LDVARGMEYLHTLAHQSFIHRDLKSSNILLGDDFRAKVSDFGLVRLAPNGEKSIETKLAGTFGYLAPEYAETGKITTKVDVFSFGVVLIEMLTGLVALDE GRPEEKQHLATWFRKVYLDKEMPKGAIDSELEVNKDTLESISTIADLAWHCTARDHGQRPEMGYAVNVLAPLVEKWKPMDDDPEDYCGIDYSLPLNQMVK GWQEAEGKDLSYVDLEDSKGSIPARPTGFADSFTSADGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10016952 [exp]	0	1
AT1G53470		MSL4	mechanosensitive channel of sm...		Lus10013692 [exp]	1.4	0.8868
AT4G29720		ATPAO5	polyamine oxidase 5 (.1)		Lus10040559 [exp]	2.8	0.8723
AT4G29720		ATPAO5	polyamine oxidase 5 (.1)		Lus10040558 [exp]	5.5	0.8619
AT4G29720		ATPAO5	polyamine oxidase 5 (.1)		Lus10006011 [exp]	5.7	0.8653
AT1G24040			Acyl-CoA N-acyltransferases (N...		Lus10030649 [exp]	6.2	0.8659
AT4G33170			Tetratricopeptide repeat (TPR)...		Lus10034948 [exp]	6.3	0.8254
AT3G23940			dehydratase family (.1.2)		Lus10043132 [exp]	6.9	0.8375
AT4G36360		BGAL3	beta-galactosidase 3 (.1.2)		Lus10041798 [exp]	11.2	0.8465
AT4G00570		NAD-ME2	NAD-dependent malic enzyme 2 (...		Lus10040930 [exp]	11.4	0.8210
AT5G15450		AtCLPB3, APG6, ...	CASEIN LYTIC PROTEINASE B-P, A...		Lus10030705 [exp]	11.6	0.8328

Compare expression of checked genes

Lus10016952 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.