Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09180 464 / 9e-163 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021276 [exp] 655 / 0 AT3G09180 414 / 4e-143 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G070700 [exp] 561 / 0 AT3G09180 504 / 1e-178 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11571 [flax] [poplar] Med27 Mediator complex subunit 27
Representative CDS sequence Show only first row Show all	>Lus10016953 pacid=23172954 polypeptide=Lus10016953 locus=Lus10016953.g ID=Lus10016953.BGIv1.0 annot-version=v1.0 ATGGATGTGAAGCCGAATCTCCAGATGCAACACTTGCAACAGCAACCGGATCCGCAAGCCGCAGCAGCAACTCCAAGCACTAGCGTATCTCAGCCGGCGG AAGCGCCACCGAAGCAGGTGGCGTTGGCAATGGAGAGGCTATCCCAGGCTGCTCGACTCATTGCCGATGTGAGGATTGGTGCTGACCAGCTTCTAGAGGC ACTCTTCTTCGCCGCTCAGTCTCACCAGCACAACAAGACCTTGCAGTTCTTGATCAAGGAAGATGCTAACATGCGCCAGCACCTCCAGGAGCTGCGCACT ATAGGAAGGCAGCTCGAAGAAACTGGGGTTCTGAACGATTCTATGAAATCCAGGGGTGATTCTTGGGGTTTGAATATACCATTGGTTTGTCCAGATGGTG CAGTGGTTGCTTATGCGTGGAAACGGCAGCTTGCTGGACAGGCCGGTGCTTCTGCTGTTGATAGAACCAGGTTAGCTGTTAAGGCATTCAGCGATCAGAA AAAGAGATTCTTTCCTCACCTAGAAGATGATGAAGAAGATCAAAGTACAGAGCCAGCTGCTAAGAAACCCTGTCGGCCTCAGACGCCCTTGACAAGTCAG CTAGATGAGCTGGAAGATTTCAAATCGCTGGCTGATGTTCTAGCTCGTCTAGAGAAGGAAGCCCCAAATGTTAAAGTTCTTACGTATCAACGACTGGATT GGCTGAAAAGAGCTGCTTCTTTACCTATGTCGGGAAATAAGAATGACGTTGAATCTTCAAAAGACCATACTTTTCACAGTTTAAATAAAATGAGGACAGG AGCACAGAGTGCTGTTGCCTCTGAAAGGACTTCTGTGATTGAATTATCATTTCCCCATACCTTCAGAGCTGTAGTTTCCTTGCACCCTGCTGGTTCCATT GATCCAGATGCTGTTGCATTCTTTTCCACAGACGAGGGTGGCAGCTATATGCATGCCAGAGGTTCTTCCATCCATCACGTATATAGACACATCACGGAGC ATGCGGGCAACGCTTTGCAGCATTTTCTTGGAGTCAAGAGTGAAGCAGCTCTGTACATTCTTTTGCATTGGATATGCAGCTACCAGACATTATTTTCCAA AGTTTGCAGTGCGTGTGGGAGGCTATTGAAACTGGACCGGAAGTCGTCAATGATTCTACCTCCAGTTTGTCGTTCGTTTCGACAATTCTTCCCTGCCATG GATTCTCCCTCCGAACCCACATCATCAACCAAGGACCAAAGACCGGGAGCTTATCACGTTGGTTGCTACTCGGAGGAGTTGTAG
AA sequence Show only first row Show all	>Lus10016953 pacid=23172954 polypeptide=Lus10016953 locus=Lus10016953.g ID=Lus10016953.BGIv1.0 annot-version=v1.0 MDVKPNLQMQHLQQQPDPQAAAATPSTSVSQPAEAPPKQVALAMERLSQAARLIADVRIGADQLLEALFFAAQSHQHNKTLQFLIKEDANMRQHLQELRT IGRQLEETGVLNDSMKSRGDSWGLNIPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLAVKAFSDQKKRFFPHLEDDEEDQSTEPAAKKPCRPQTPLTSQ LDELEDFKSLADVLARLEKEAPNVKVLTYQRLDWLKRAASLPMSGNKNDVESSKDHTFHSLNKMRTGAQSAVASERTSVIELSFPHTFRAVVSLHPAGSI DPDAVAFFSTDEGGSYMHARGSSIHHVYRHITEHAGNALQHFLGVKSEAALYILLHWICSYQTLFSKVCSACGRLLKLDRKSSMILPPVCRSFRQFFPAM DSPSEPTSSTKDQRPGAYHVGCYSEEL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09180			unknown protein		Lus10016953 [exp]	0	1
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10042785 [exp]	1.4	0.8622
AT1G43190		PTB3	polypyrimidine tract-binding p...		Lus10028566 [exp]	4.7	0.7879
AT2G14520			CBS domain-containing protein ...		Lus10005259 [exp]	4.9	0.8179
AT5G45380		ATDUR3	DEGRADATION OF UREA 3, solute:...		Lus10000112 [exp]	6.9	0.7776
AT5G17210			Protein of unknown function (D...		Lus10007189 [exp]	7.7	0.7872
					Lus10039504 [exp]	8.2	0.7319
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Lus10034573 [exp]	8.5	0.7981
AT1G50710			unknown protein		Lus10043109 [exp]	11.0	0.8208
AT4G30935	WRKY	ATWRKY32, WRKY3...	WRKY DNA-binding protein 32 (....		Lus10036268 [exp]	12.5	0.8031
AT1G32930			Galactosyltransferase family p...		Lus10033248 [exp]	14.5	0.7798

Compare expression of checked genes

Lus10016953 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.