Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31400 232 / 2e-74 CTF7 damaged DNA binding;DNA-directed DNA polymerases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021277 [exp] 489 / 7e-176 AT4G31400 296 / 4e-99 damaged DNA binding;DNA-directed DNA polymerases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G070800 [exp] 303 / 5e-102 AT4G31400 330 / 7e-112 damaged DNA binding;DNA-directed DNA polymerases (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016954 pacid=23172967 polypeptide=Lus10016954 locus=Lus10016954.g ID=Lus10016954.BGIv1.0 annot-version=v1.0 ATGCAACCCAAACTAAGGTCCTTCTTCAAGCCTTCGTCTTCTTCCTCCTCCTCTTCTCCTCCGGCATCGTCTTATCCCTCTTCATGCGATGTCACAACTT ACAGCCGCAGAATTTACAGGGAACAAGGACGTGAAAGCGCTGGAGAAAGATCAATCTCAGGTGAATTTTGTACCGCGGATAGGGTTCTGAACAGAAAGAG AAGCTACGCGCTGCTCCATCTGGAGTTTGGGCAATCGGATTTCAATCTCCGAATTTGTTCCGCCTGCGGGTTTGATTATGCTCCAGGGGACGGCAAGGAT GAGAAGGCCCACAAAGCATTTCACAGAAGTTACACTCATGGAATCCAATTTAGGGGTTGGCAGAACGACAGGGTCATTCCTATATATTGCCGCGAAGGAG ACCGTATTGTTCTGGTTTTGGATTCTGATCCTTCAGCTCGAACAACCAAGTTGAAGGATGTGATTAAAATGATGGAGATTGAGCTTGGAGAAGGGTGGAT TTTTCATGACCTATGCAAGGTCTATCTATACGTTTCTTCTTCGAACAGGACTGCAGGTTGCCTGGTCACCGAACCAATAAATGAAGCGTTCAAGACGATA TCTTCCTCTGTTAATAAGAAGGCAGAAACTGAAGCTACTGGGAAGGAATCAATAACAGAGCTAAGGGCTCTCAAATTTGGAGATGTCGCCTTCAAAAGGG AAGCAGTTAAAAAGATCCCCTCTACCACTTCTCGAGAGGCAATAAATGGGAGCCACTATGGAGCTATGGTGTGTGAAGAGAGAACTGTTCCTGCTGCATG TGGCATCAGAGCTATATGGGTCACTCCCTCCAACAGAAGGAAAGGAATTGCCACTCGGTTACTCGACGCTGCGAGGTACTTTGCTAAAGCTGGTGCTCTT TTGTCTACTTTCATGATCTGA
AA sequence Show only first row Show all	>Lus10016954 pacid=23172967 polypeptide=Lus10016954 locus=Lus10016954.g ID=Lus10016954.BGIv1.0 annot-version=v1.0 MQPKLRSFFKPSSSSSSSSPPASSYPSSCDVTTYSRRIYREQGRESAGERSISGEFCTADRVLNRKRSYALLHLEFGQSDFNLRICSACGFDYAPGDGKD EKAHKAFHRSYTHGIQFRGWQNDRVIPIYCREGDRIVLVLDSDPSARTTKLKDVIKMMEIELGEGWIFHDLCKVYLYVSSSNRTAGCLVTEPINEAFKTI SSSVNKKAETEATGKESITELRALKFGDVAFKREAVKKIPSTTSREAINGSHYGAMVCEERTVPAACGIRAIWVTPSNRRKGIATRLLDAARYFAKAGAL LSTFMI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31400		CTF7	damaged DNA binding;DNA-direct...		Lus10016954 [exp]	0	1
AT4G24200			Transcription elongation facto...		Lus10028515 [exp]	8.9	0.8249
AT3G48470		EMB2423	embryo defective 2423 (.1)		Lus10001101 [exp]	12.8	0.8313
					Lus10005713 [exp]	18.9	0.8248
AT2G33835	C3HZnF	FES1	FRIGIDA-ESSENTIAL 1, Zinc fing...		Lus10025447 [exp]	23.4	0.8114
AT2G39100			RING/U-box superfamily protein...		Lus10034165 [exp]	25.5	0.7474
AT3G45830			unknown protein		Lus10036145 [exp]	43.0	0.8063
AT3G61740		SDG14, ATX3	SET domain protein 14 (.1.2)		Lus10012626 [exp]	43.8	0.7948
					Lus10001309 [exp]	49.5	0.8035
AT3G04490			unknown protein		Lus10022024 [exp]	49.8	0.8038
AT1G79190			ARM repeat superfamily protein...		Lus10016753 [exp]	50.3	0.8087

Compare expression of checked genes

Lus10016954 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.