Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06340 229 / 9e-76 ATNUDX27 nudix hydrolase homolog 27 (.1) AT3G10620 217 / 2e-71 ATNUDX26 nudix hydrolase homolog 26 (.1) AT1G30110 171 / 1e-53 ATNUDX25 nudix hydrolase homolog 25 (.1.2) AT5G47650 44 / 4e-05 ATNUDX2, ATNUDT2 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) AT4G25434 43 / 0.0001 ATNUDT10 nudix hydrolase homolog 10 (.1.2) AT4G12720 40 / 0.0006 ATNUDX7, GFG1, AtNUDT7, NUDT7 GROWTH FACTOR GENE 1, Arabidopsis thaliana Nudix hydrolase homolog 7, MutT/nudix family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021278 [exp] 429 / 9e-155 AT5G06340 251 / 9e-85 nudix hydrolase homolog 27 (.1) Lus10021279 [exp] 325 / 8e-114 AT5G06340 253 / 1e-85 nudix hydrolase homolog 27 (.1) Lus10016956 [exp] 320 / 2e-111 AT5G06340 253 / 3e-85 nudix hydrolase homolog 27 (.1) Lus10018988 [exp] 218 / 1e-71 AT3G10620 288 / 8e-100 nudix hydrolase homolog 26 (.1) Lus10004195 [exp] 207 / 5e-67 AT5G06340 236 / 1e-78 nudix hydrolase homolog 27 (.1) Lus10033839 [exp] 198 / 1e-63 AT3G10620 281 / 2e-96 nudix hydrolase homolog 26 (.1) Lus10029398 [exp] 197 / 4e-63 AT5G06340 223 / 3e-73 nudix hydrolase homolog 27 (.1) Lus10003714 [exp] 172 / 2e-54 AT1G30110 275 / 6e-96 nudix hydrolase homolog 25 (.1.2) Lus10013459 [exp] 142 / 2e-38 AT4G31890 703 / 0.0 ARM repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G203700 [exp] 234 / 1e-77 AT5G06340 253 / 4e-85 nudix hydrolase homolog 27 (.1) Potri.016G070900 [exp] 231 / 1e-76 AT5G06340 258 / 2e-87 nudix hydrolase homolog 27 (.1) Potri.008G017900 [exp] 209 / 4e-68 AT3G10620 270 / 2e-92 nudix hydrolase homolog 26 (.1) Potri.010G242100 [exp] 209 / 5e-68 AT3G10620 290 / 2e-100 nudix hydrolase homolog 26 (.1) Potri.010G112000 [exp] 179 / 5e-57 AT1G30110 302 / 2e-106 nudix hydrolase homolog 25 (.1.2) Potri.008G130100 [exp] 179 / 6e-57 AT1G30110 300 / 8e-106 nudix hydrolase homolog 25 (.1.2) Potri.016G006000 [exp] 46 / 7e-06 AT5G47650 352 / 3e-122 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.014G168400 [exp] 45 / 3e-05 AT5G47650 331 / 2e-113 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.005G077500 [exp] 44 / 6e-05 AT5G47650 322 / 2e-110 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.001G154300 [exp] 41 / 0.0004 AT5G47240 416 / 2e-145 nudix hydrolase homolog 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [flax] [poplar] NUDIX PF00293 [flax] [poplar] NUDIX NUDIX domain
Representative CDS sequence Show only first row Show all	>Lus10016955 pacid=23172959 polypeptide=Lus10016955 locus=Lus10016955.g ID=Lus10016955.BGIv1.0 annot-version=v1.0 ATGAGTTGGTGTGAGGTTCTGAGAAGCCCTCGTGTTTATCTCGTCGGAGAGAGACAAGACTACCCTTCGAAACCAGTCAAATTTTCCCCACCGCCATCAG TTTCCTGCAAACGTAGGTCTGTAGGGAAAGCTGGAGCCCCGACAACGTTGACTGTGGAAAGTCCACCTGCTGGGTATCGGAAAAGCGTCGGGATTTGTTT GGTCAATTCATCCAATAAGGTCTTCACGGGGTCGAAGATATGGATTCCGGATAGTTGGCAAATGCCTCAGGGTGGTATCGATGAGGGGGAAGATGTCAGG AATGCAGTTATGAGAGAGTTGAGGGAGGAAACTGGTGTTACTTCAGCTCAGTTTGTTGGTGAGGCACCCTATTGGCTGACTTATGATTTCCCACGTCGAA TGAGAGAGAGGCTTAGTAGGAAATGGGGCAGAAACTACAAGGGTCAGGCTCAAAAGTGGTTTCTTTTGAAGTTTGCGGGGGAGGACGCAGAGATTAACCT TTTTGGCGATGAGTTGAAGCAGCGGACATGGCTGTCACCAGATGTGGTGGTTGACCATGCTGTGGATTTCAGGAAGCCTGTCTATCAACAAGTTATCCGG TTGTTTAGTCCATATTTCCAAGCAAATGGTAATGTCGAACTGTGCGGTGAAACTAATGGCAGCCTTCATATTAAACCACGTCCTCTCAGATATACTCTGC TGTGA
AA sequence Show only first row Show all	>Lus10016955 pacid=23172959 polypeptide=Lus10016955 locus=Lus10016955.g ID=Lus10016955.BGIv1.0 annot-version=v1.0 MSWCEVLRSPRVYLVGERQDYPSKPVKFSPPPSVSCKRRSVGKAGAPTTLTVESPPAGYRKSVGICLVNSSNKVFTGSKIWIPDSWQMPQGGIDEGEDVR NAVMRELREETGVTSAQFVGEAPYWLTYDFPRRMRERLSRKWGRNYKGQAQKWFLLKFAGEDAEINLFGDELKQRTWLSPDVVVDHAVDFRKPVYQQVIR LFSPYFQANGNVELCGETNGSLHIKPRPLRYTLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06340		ATNUDX27	nudix hydrolase homolog 27 (.1...		Lus10016955 [exp]	0	1
AT1G14740			Protein of unknown function (D...		Lus10030769 [exp]	6.6	0.9155
AT1G21200	Trihelix		sequence-specific DNA binding ...		Lus10018886 [exp]	9.5	0.9071
AT1G72680		ATCAD1	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10010149 [exp]	10.1	0.9154
AT4G27740			Yippee family putative zinc-bi...		Lus10023244 [exp]	11.2	0.9041
AT3G07440			unknown protein		Lus10020404 [exp]	13.9	0.9148
AT1G54730			Major facilitator superfamily ...		Lus10029966 [exp]	14.7	0.9065
AT2G25950			Protein of unknown function (D...		Lus10007454 [exp]	15.1	0.9141
AT3G14460			LRR and NB-ARC domains-contain...		Lus10039548 [exp]	17.5	0.8799
AT5G11500			unknown protein		Lus10037899 [exp]	18.5	0.9062
AT3G19460			Reticulon family protein (.1.2...		Lus10014102 [exp]	19.4	0.8946

Compare expression of checked genes

Lus10016955 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.