Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06340 248 / 2e-83 ATNUDX27 nudix hydrolase homolog 27 (.1) AT3G10620 231 / 5e-77 ATNUDX26 nudix hydrolase homolog 26 (.1) AT1G30110 173 / 9e-55 ATNUDX25 nudix hydrolase homolog 25 (.1.2) AT4G25434 44 / 3e-05 ATNUDT10 nudix hydrolase homolog 10 (.1.2) AT5G47650 42 / 0.0001 ATNUDX2, ATNUDT2 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021279 [exp] 429 / 8e-155 AT5G06340 253 / 1e-85 nudix hydrolase homolog 27 (.1) Lus10021278 [exp] 365 / 3e-129 AT5G06340 251 / 9e-85 nudix hydrolase homolog 27 (.1) Lus10016955 [exp] 341 / 5e-120 AT5G06340 231 / 6e-77 nudix hydrolase homolog 27 (.1) Lus10004195 [exp] 251 / 2e-84 AT5G06340 236 / 1e-78 nudix hydrolase homolog 27 (.1) Lus10029398 [exp] 238 / 4e-79 AT5G06340 223 / 3e-73 nudix hydrolase homolog 27 (.1) Lus10018988 [exp] 230 / 1e-76 AT3G10620 288 / 8e-100 nudix hydrolase homolog 26 (.1) Lus10033839 [exp] 213 / 2e-69 AT3G10620 281 / 2e-96 nudix hydrolase homolog 26 (.1) Lus10003714 [exp] 180 / 2e-57 AT1G30110 275 / 6e-96 nudix hydrolase homolog 25 (.1.2) Lus10013459 [exp] 152 / 3e-42 AT4G31890 703 / 0.0 ARM repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G203700 [exp] 251 / 2e-84 AT5G06340 253 / 4e-85 nudix hydrolase homolog 27 (.1) Potri.016G070900 [exp] 242 / 7e-81 AT5G06340 258 / 2e-87 nudix hydrolase homolog 27 (.1) Potri.010G242100 [exp] 220 / 2e-72 AT3G10620 290 / 2e-100 nudix hydrolase homolog 26 (.1) Potri.008G017900 [exp] 220 / 2e-72 AT3G10620 270 / 2e-92 nudix hydrolase homolog 26 (.1) Potri.008G130100 [exp] 192 / 4e-62 AT1G30110 300 / 8e-106 nudix hydrolase homolog 25 (.1.2) Potri.010G112000 [exp] 189 / 4e-61 AT1G30110 302 / 2e-106 nudix hydrolase homolog 25 (.1.2) Potri.016G006000 [exp] 47 / 3e-06 AT5G47650 352 / 3e-122 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.014G168400 [exp] 44 / 4e-05 AT5G47650 331 / 2e-113 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.001G368000 [exp] 43 / 9e-05 AT5G47650 342 / 6e-119 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.005G077500 [exp] 43 / 0.0001 AT5G47650 322 / 2e-110 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [flax] [poplar] NUDIX PF00293 [flax] [poplar] NUDIX NUDIX domain
Representative CDS sequence Show only first row Show all	>Lus10016956 pacid=23173037 polypeptide=Lus10016956 locus=Lus10016956.g ID=Lus10016956.BGIv1.0 annot-version=v1.0 ATGAGGTCCTGTGAGGTACTGAGAAGCTCCCATGTTTATCTCGTCAGAGAGAGACGAGACTACCCTTCGGAGCCAGTCAAATTTTCCCGACTGCCACCAG CTTCCTGCAAAAGTAGGCTTTCTTCTTCCAGATCTTCCTCTGAGTCTCTGGGGAATGCAGCATCTCCTACTGCGTTGACTCTGGAAATTCCACCCGCTGG GTATCGGAAAAGCGTCGGGATTTGTTTGATCAATTCATCCAATCAGGTTTTCGCGGGTTCGAAGATATGGGTTCCGGATAGCTGGCAAATGCCTCAGGGT GGTGTCGATGAGGGGGAAGATCTCAGGAATGCAGCTACCAGAGAGTTGAGGGAGGAAACTAGTGTTACTTCAGCTCAGTTTCTTGCTGAGGCACCCTATT GGCTGACTTATGATTTCCCACGTCAAATGAGAGAAAGGCTTAGTAGGAAATGGGGCACAAACTATAAGGGTCAAGCTCAAAAATGGTTTCTTTTCAAGTT TACGGGTGAGGATGCAGAGATTAACCTTTTCGGCGATGGATTGGAAAAGCAGGAGTTCAAGCACTGGACATGGCTATCACCAGATGTGGTGGTTCACCAT GCTGTGGATTTCAGGAAGCCTGTCTATGAAGAAGTTATTCGGTTGTTTAGTCCATATCTCCCAGCAAATGGTAATGACGAAAGTGTGCAGTGA
AA sequence Show only first row Show all	>Lus10016956 pacid=23173037 polypeptide=Lus10016956 locus=Lus10016956.g ID=Lus10016956.BGIv1.0 annot-version=v1.0 MRSCEVLRSSHVYLVRERRDYPSEPVKFSRLPPASCKSRLSSSRSSSESLGNAASPTALTLEIPPAGYRKSVGICLINSSNQVFAGSKIWVPDSWQMPQG GVDEGEDLRNAATRELREETSVTSAQFLAEAPYWLTYDFPRQMRERLSRKWGTNYKGQAQKWFLFKFTGEDAEINLFGDGLEKQEFKHWTWLSPDVVVHH AVDFRKPVYEEVIRLFSPYLPANGNDESVQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06340		ATNUDX27	nudix hydrolase homolog 27 (.1...		Lus10016956 [exp]	0	1
AT5G06340		ATNUDX27	nudix hydrolase homolog 27 (.1...		Lus10021279 [exp]	1.0	0.9290
AT5G51510			unknown protein		Lus10027200 [exp]	5.3	0.8738
AT2G39630			Nucleotide-diphospho-sugar tra...		Lus10040296 [exp]	8.8	0.8380
AT2G36410			Family of unknown function (DU...		Lus10027724 [exp]	9.2	0.8526
AT3G16990			Haem oxygenase-like, multi-hel...		Lus10016885 [exp]	9.5	0.8882
AT5G19960			RNA-binding (RRM/RBD/RNP motif...		Lus10017757 [exp]	9.5	0.8646
AT5G13240			transcription regulators (.1)		Lus10007961 [exp]	10.4	0.8809
AT5G59460			scarecrow-like transcription f...		Lus10004969 [exp]	13.6	0.8673
AT4G35980			unknown protein		Lus10028436 [exp]	14.7	0.8688
AT3G05675			BTB/POZ domain-containing prot...		Lus10013580 [exp]	17.1	0.8700

Compare expression of checked genes

Lus10016956 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.