Plant FIBer expression Database

Lus10016958 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021281
[exp]
91 / 1e-22 ND /
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10016958 pacid=23173029 polypeptide=Lus10016958 locus=Lus10016958.g ID=Lus10016958.BGIv1.0 annot-version=v1.0
ATGGCGGAGTTCACACGTAAGCCCTCGCGTCGGCTTCCGCCTCTTTCATCCTGCCGTCTCCCACCTCCCACCTCGGAGTGCCCTTCCTGCCGCCGCAATG
AAGACGACGAGCTGGCTCACTACTTTCCCGCTCTTTCCCTCTTTTTAAGTAGAAATCGCCTGTCCACTGCTCCTAATCACACAAATACTCTGATGTCAGC
TGCTTCCTCCCAGTGGATTGATTATAAACGGCTCGTCTTTGGACTTCATTTTACGATCCAGAGGCTGAAAAATGCTGCAGCAAGTCCTCGCCTGCCATGT
GGCTACCCTATCTGTTTCAACGACGGTGGCCCCTCTGACCAACACCGCCGGCCTCAGAAGGTCTCTGCCGCCCGGTCGGAGCCAGTCCGCCAGGTTTATC
TCCGCAAACCGCAGAATGGCACTGCGAGAAAGGATACGGAACAAAGGAGTGCAGCAGCTGGGAGTTTGCAGAAACAGAGGATCTGGGTTCAGAGCCGGTT
TGAGGGAACCGGGTACGGGCTGCTGCGCCGTTCCTCTGCAGGAACGGGAAGTGGTACCGGCGTTTTCCATCCTCTGGTCGAAAAGAAGGAGACAAAAGCT
CAGGACGCTGCTAAAGCAAATCTCCTTGTCTCCGGCAAGCACAGGCGGCGAGAGGGTTTACAGGTAGCAGCAGCTCAAGCAGTGGAGGCTAAACGTTCCA
TGGAAAGGGTGGAAGAAGAAGAAGAAGAAGAAGGGAGTGGTGGGGAAGAAGATTGCTATTACCATCTTCCACCAGAGATTGAATTCCTAATTAGATGA
AA sequence
>Lus10016958 pacid=23173029 polypeptide=Lus10016958 locus=Lus10016958.g ID=Lus10016958.BGIv1.0 annot-version=v1.0
MAEFTRKPSRRLPPLSSCRLPPPTSECPSCRRNEDDELAHYFPALSLFLSRNRLSTAPNHTNTLMSAASSQWIDYKRLVFGLHFTIQRLKNAAASPRLPC
GYPICFNDGGPSDQHRRPQKVSAARSEPVRQVYLRKPQNGTARKDTEQRSAAAGSLQKQRIWVQSRFEGTGYGLLRRSSAGTGSGTGVFHPLVEKKETKA
QDAAKANLLVSGKHRRREGLQVAAAQAVEAKRSMERVEEEEEEEGSGGEEDCYYHLPPEIEFLIR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10016958
[exp]
0 1
AT3G22600 Bifunctional inhibitor/lipid-t... Lus10041197
[exp]
1.0 0.9621
AT1G09812 unknown protein Lus10035787
[exp]
1.4 0.9448
AT1G28220 ATPUP3 purine permease 3 (.1) Lus10020939
[exp]
3.6 0.9014
Lus10030151
[exp]
3.7 0.9105
AT1G27930 Protein of unknown function (D... Lus10012537
[exp]
3.9 0.9157
AT4G25300 2-oxoglutarate (2OG) and Fe(II... Lus10004581
[exp]
4.6 0.9406
AT1G64230 UBC28 ubiquitin-conjugating enzyme 2... Lus10027846
[exp]
6.0 0.9253
AT1G01580 FRD1, ATFRO2, F... FERRIC CHELATE REDUCTASE DEFEC... Lus10039268
[exp]
6.9 0.9052
AT1G75250 MYB RSM3, ATRL6 RADIALIS-LIKE SANT/MYB 3, RAD-... Lus10026009
[exp]
8.1 0.9144
AT2G25625 unknown protein Lus10013129
[exp]
9.9 0.9031

Lus10016958 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.