Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027769 [exp] 47 / 5e-07 ND / Lus10009869 [exp] 42 / 2e-05 ND / Lus10015774 [exp] 41 / 8e-05 ND / Lus10033789 [exp] 41 / 0.0001 ND / Lus10006149 [exp] 40 / 0.0002 ND / Lus10021734 [exp] 38 / 0.0004 ND / Lus10016933 [exp] 38 / 0.0005 ND / Lus10008228 [exp] 39 / 0.0007 ND / Lus10011027 [exp] 0 / 1 AT5G01960 619 / 0.0 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016961 pacid=23173013 polypeptide=Lus10016961 locus=Lus10016961.g ID=Lus10016961.BGIv1.0 annot-version=v1.0 ATGCTTGCGGAGTTTCATAAGCAAATTGGTACTCTCTCCCCCAAGATGCAGCCGATGGCTCAAGTCTTGGAAGATTCTATATCAGACTCATCTGGAGCTT CCAGATCATCAGGAACTTCTAAAAGAAAAAGACCGGCCGAAAATAGCCCACCAACTGATGAGAAAGATGAGGAGGAGGATAATGAAGACGAAAATCTTCG GCGTTGGAAATTACGACCTCTTCAGACCGCCATCATCGTCTTCAGGCGGAGGATCAGCTACCATTACTGTAGCAGCAACAGCAGCGGAGGAAGAGGAGGA GGACTCATGACCGCTTCCATAATCCAGGCTCCTATCTCTGCTCTCCTCGAGTACTCCAGCCTCCTCCGGCCTTCTAGGTCATCATCCGACTCGATTCTTC TTCTTCATCATCATCGGGTGATCATCTCATCTCTCACAATCCTCCTCCATATAAATTCTTTTTAA
AA sequence Show only first row Show all	>Lus10016961 pacid=23173013 polypeptide=Lus10016961 locus=Lus10016961.g ID=Lus10016961.BGIv1.0 annot-version=v1.0 MLAEFHKQIGTLSPKMQPMAQVLEDSISDSSGASRSSGTSKRKRPAENSPPTDEKDEEEDNEDENLRRWKLRPLQTAIIVFRRRISYHYCSSNSSGGRGG GLMTASIIQAPISALLEYSSLLRPSRSSSDSILLLHHHRVIISSLTILLHINSF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10016961 [exp]	0	1
AT2G43210			Ubiquitin-like superfamily pro...		Lus10025504 [exp]	6.6	0.8034
AT4G37560			Acetamidase/Formamidase family...		Lus10011529 [exp]	9.1	0.8050
AT1G79900		ATMBAC2, BAC2	RABIDOPSIS MITOCHONDRIAL BASIC...		Lus10011451 [exp]	18.2	0.7686
					Lus10007187 [exp]	21.9	0.7313
					Lus10030678 [exp]	26.2	0.7236
AT5G01750			Protein of unknown function (D...		Lus10009094 [exp]	38.5	0.7427
					Lus10001550 [exp]	41.5	0.7140
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10002070 [exp]	63.9	0.7440
AT1G11340			S-locus lectin protein kinase ...		Lus10002717 [exp]	65.5	0.6860
AT4G17380		MSH4, ATMSH4	ARABIDOPSIS MUTS HOMOLOG 4, M...		Lus10028966 [exp]	66.8	0.7540

Compare expression of checked genes

Lus10016961 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.