Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35980 192 / 2e-61 NHL10, YLS9, ATNHL10 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G06320 168 / 5e-52 NHL3 NDR1/HIN1-like 3 (.1) AT3G11650 141 / 2e-41 NHL2 NDR1/HIN1-like 2 (.1) AT2G35460 139 / 2e-40 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT1G32270 110 / 3e-28 ATSYP24 SYNTAXIN 24, syntaxin, putative (.1) AT3G11660 81 / 1e-18 NHL1 NDR1/HIN1-like 1 (.1) AT2G35960 78 / 2e-17 NHL12 NDR1/HIN1-like 12 (.1) AT5G06330 76 / 1e-16 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G52470 75 / 2e-16 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G44220 75 / 2e-16 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021287 [exp] 357 / 2e-126 AT2G35980 236 / 7e-79 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10021288 [exp] 352 / 1e-124 AT2G35980 237 / 2e-79 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10021286 [exp] 82 / 5e-19 AT3G52470 298 / 1e-103 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10016960 [exp] 78 / 2e-17 AT3G11660 295 / 1e-102 NDR1/HIN1-like 1 (.1) Lus10021404 [exp] 77 / 4e-17 AT5G22870 151 / 6e-46 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10016161 [exp] 77 / 4e-17 AT5G22870 148 / 8e-45 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10000157 [exp] 75 / 2e-16 AT3G52470 164 / 3e-51 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10032932 [exp] 74 / 5e-16 AT5G53730 211 / 4e-69 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10007364 [exp] 74 / 2e-15 AT1G65690 267 / 6e-90 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G204300 [exp] 201 / 5e-65 AT2G35980 208 / 6e-68 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G071600 [exp] 196 / 4e-63 AT2G35980 205 / 9e-67 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.004G023300 [exp] 86 / 1e-20 AT4G05220 276 / 7e-95 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.009G003800 [exp] 80 / 2e-18 AT5G22870 179 / 4e-57 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G071500 [exp] 80 / 4e-18 AT3G11660 272 / 1e-93 NDR1/HIN1-like 1 (.1) Potri.011G027400 [exp] 79 / 8e-18 AT4G05220 264 / 8e-90 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G204200 [exp] 77 / 4e-17 AT3G11660 267 / 1e-91 NDR1/HIN1-like 1 (.1) Potri.012G006000 [exp] 76 / 1e-16 AT5G53730 225 / 4e-75 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.009G019600 [exp] 73 / 9e-16 AT3G44220 242 / 8e-82 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.015G148200 [exp] 71 / 2e-14 AT5G36970 227 / 2e-74 NDR1/HIN1-like 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10016962 pacid=23172944 polypeptide=Lus10016962 locus=Lus10016962.g ID=Lus10016962.BGIv1.0 annot-version=v1.0 ATGGCTGAGACCAAGCAAACAACTCCACTCAACGGAGCCTACTACGGGCCCTCAATCCCACCCCAACAGAGCTACCACAGCCATGGCCGTCGATCTGGCT GTGGCTGCTGCGGATGTCTCTCCAGCTGCCTCTTCAAGATCATCCTCACCATCGTCGTCATAATCGGCATAGCCATCCTTGTATTCTGGCTAGTGGTCCG ACCCAACAAGATCAAAGTCAACCTAACCGACGCCACCTTAACCCAGTTCAACCATTCCTCATCCGACAACCTCCTCCGCTACAACCTCGCCCTGAACGTC ACCGTTCGCAACCCCAACAAGCGAATCGGAATCTACTACGACTCAATCGAGGCTCGTGGGTTTTACTCGGGCCAGCGGTTCGGGTACACCGGTCTACAGC CATTTTACCAGGGTCACAAGAACACAAGCATCCTCAGCGCTAATCTGCAGGGACAGAACGTCGTCGTATTGAGCGGTGACGATCTGGCCGATTTCAACAG GGAGACTTCGGAAGGGGTTTACAGAGTGGATGTTACGTTTTATATGAGGATTAGGCTCAAGGTTGGCAAGATTAAAACCAGGAGGATGAAGCCTAAGGTT GAATGTGAGATGCATTTTAGTCCTAATGGCGGCGGCTTGGTTACTGGTCGTCGTAACAAGTGCGAGATTGACTTCTGA
AA sequence Show only first row Show all	>Lus10016962 pacid=23172944 polypeptide=Lus10016962 locus=Lus10016962.g ID=Lus10016962.BGIv1.0 annot-version=v1.0 MAETKQTTPLNGAYYGPSIPPQQSYHSHGRRSGCGCCGCLSSCLFKIILTIVVIIGIAILVFWLVVRPNKIKVNLTDATLTQFNHSSSDNLLRYNLALNV TVRNPNKRIGIYYDSIEARGFYSGQRFGYTGLQPFYQGHKNTSILSANLQGQNVVVLSGDDLADFNRETSEGVYRVDVTFYMRIRLKVGKIKTRRMKPKV ECEMHFSPNGGGLVTGRRNKCEIDF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35980		NHL10, YLS9, AT...	YELLOW-LEAF-SPECIFIC GENE 9, A...		Lus10016962 [exp]	0	1
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10017981 [exp]	1.0	0.9955
AT2G02010		GAD4	glutamate decarboxylase 4 (.1)		Lus10034426 [exp]	2.4	0.9920
AT2G45220			Plant invertase/pectin methyle...		Lus10038917 [exp]	2.6	0.9892
AT1G09090		ATRBOHB-BETA, A...	respiratory burst oxidase homo...		Lus10029896 [exp]	2.8	0.9903
AT3G59710			NAD(P)-binding Rossmann-fold s...		Lus10035736 [exp]	2.8	0.9891
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10028509 [exp]	4.2	0.9904
AT2G35980		NHL10, YLS9, AT...	YELLOW-LEAF-SPECIFIC GENE 9, A...		Lus10021288 [exp]	5.8	0.9839
AT1G09090		ATRBOHB-BETA, A...	respiratory burst oxidase homo...		Lus10020644 [exp]	6.0	0.9892
AT1G70420			Protein of unknown function (D...		Lus10030612 [exp]	6.6	0.9870
AT3G48180			unknown protein		Lus10043469 [exp]	7.1	0.9880

Compare expression of checked genes

Lus10016962 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.