Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016962 [exp] 91 / 1e-21 AT2G35980 237 / 3e-79 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10021288 [exp] 86 / 1e-19 AT2G35980 237 / 2e-79 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10021287 [exp] 85 / 3e-19 AT2G35980 236 / 7e-79 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016963 pacid=23173039 polypeptide=Lus10016963 locus=Lus10016963.g ID=Lus10016963.BGIv1.0 annot-version=v1.0 ATGGACTTCGCCGTAATCGGCACCGTCATGGTGGCCTTCTTCGTGGGCTATCTGGCTTTCCTATTCATCCAATTCGGCTACGTCATCATCCGCCGGAACA CTCAACTCCTCCGCCGCACATCTCCTGCCGATCTCCCAATCTCCACCGCCACCACCACCGTCGCCACCGCTTCTAGAGGAGGAAGGCAAGAATGTATACT TTCGTCGGTTAGGTTGACTTTGATCTTGTTGGGTCGGACCACTAGCCAGAATACAAGGATGGCTATGCCGATTATGACGACGATGGTGAGGATGATCTTG AAGAGGCAGCTGAAGAGACATCCGCAGCAGCCACAGACAGATCGATGGGCCTTACTCCTCCGCCGCACATCTCCTGCCGATCTCCCAATCTCCACCGCCA CCACCACCGTCGCCACCGCTTCTGTATCCCCTTGTATCCAAATGAAGAACTTTCTCCGTCTTGTCTGGAAAAGCAAGACCTGGATTCTCTCTTCCAAACC TGCAGCCGCGGGAAAACAAGCCTCCGCCGCGGCAATCTCTTCTGCTCCGGTAGCAGAAGCGGTGGTAGTCGAGGCCCACCACCAAGCGGGTCCCACGGAC GAGGACGTGGAGGATATGCTGAATGGGAGAAGGCTGATGGGCCCACCCAGGTTCTTGTTCACGATTAAAGAGGAGGAGAGAGAAGGCAGCGCAGCTGACA CGGCGTCGTTTGAAGATAGCAGCGAATCGGTTGTACTCAGCAAAGAAGAAGAAACTGACGGCCCGACCACGGCCTCTGACTCTGAATCTGCTCTTCATAA AGTCAGTTTTGGAGAAGAGGAAGAGGCGACGTCACCAGTCATCGGCTTAGAGCCGGAGGTCAATTATTCATGCCCGACGGAGGACAAGGATGACGGTTGT ATTGTTGCTCTTACACCAATCGTGCTGGTGCCGTAG
AA sequence Show only first row Show all	>Lus10016963 pacid=23173039 polypeptide=Lus10016963 locus=Lus10016963.g ID=Lus10016963.BGIv1.0 annot-version=v1.0 MDFAVIGTVMVAFFVGYLAFLFIQFGYVIIRRNTQLLRRTSPADLPISTATTTVATASRGGRQECILSSVRLTLILLGRTTSQNTRMAMPIMTTMVRMIL KRQLKRHPQQPQTDRWALLLRRTSPADLPISTATTTVATASVSPCIQMKNFLRLVWKSKTWILSSKPAAAGKQASAAAISSAPVAEAVVVEAHHQAGPTD EDVEDMLNGRRLMGPPRFLFTIKEEEREGSAADTASFEDSSESVVLSKEEETDGPTTASDSESALHKVSFGEEEEATSPVIGLEPEVNYSCPTEDKDDGC IVALTPIVLVP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10016963 [exp]	0	1
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10005661 [exp]	1.4	0.9096
AT1G68460		ATIPT1	Arabidopsis thaliana isopenten...		Lus10034334 [exp]	1.7	0.8445
					Lus10008498 [exp]	2.0	0.9096
AT1G29140			Pollen Ole e 1 allergen and ex...		Lus10042838 [exp]	3.0	0.7342
AT3G08040		ATFRD3, MAN1, F...	MANGANESE ACCUMULATOR 1, FERRI...		Lus10016228 [exp]	5.9	0.7688
AT3G16910		AAE7, ACN1	ACETATE NON-UTILIZING 1, acyl-...		Lus10016861 [exp]	6.5	0.7616
					Lus10016158 [exp]	8.4	0.7562
AT5G43540	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10021881 [exp]	8.5	0.7203
AT1G17800		AtENODL22	early nodulin-like protein 22 ...		Lus10020984 [exp]	10.2	0.7761
AT3G30210	MYB	ATMYB121	myb domain protein 121 (.1)		Lus10034372 [exp]	25.9	0.6951

Compare expression of checked genes

Lus10016963 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.