Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000027 [exp] 169 / 2e-54 AT3G11640 63 / 8e-13 unknown protein Lus10016964 [exp] 149 / 3e-47 AT3G11640 62 / 3e-13 unknown protein Lus10021290 [exp] 129 / 3e-39 AT3G11640 61 / 2e-12 unknown protein Lus10029407 [exp] 68 / 2e-14 AT3G52480 74 / 4e-16 unknown protein Lus10004203 [exp] 54 / 5e-09 AT3G52480 77 / 3e-17 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G204400 [exp] 59 / 7e-11 AT3G52480 74 / 5e-16 unknown protein Potri.016G071700 [exp] 52 / 2e-08 AT3G52480 47 / 3e-06 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016965 pacid=23172980 polypeptide=Lus10016965 locus=Lus10016965.g ID=Lus10016965.BGIv1.0 annot-version=v1.0 ATGGCTTTTATCAACAAGCTCGGTTTGGTACTAACGGCGGTCTTCCTACTCTCCTTGGTCTTACTAACTCTCCAGATTCTATACATACTCTGGCGGAGAA GACGTCTCCATCAGTCCGCCCAAGGGGATCAGAAATCAACGACCACGTCGCCGTCCATGGAGCTTCTCTATCTATGCTTCTGCGGCAGCTGGAAGAATCA CCAGGCCAATCGAATCGAGCCCACCGATGTCACAGTAATTACTTCCGTTGCGGTTGACGAGGAATTGGAGGAGATGCTGAAGCTCCACCAGCTGTACGGT CTTTCCAGGGCTCTGTTCACGATAAAGGAGGAGTCCGAGAAGGAGGACGACGGAGATTCCGTAGTGGTGATTCAGGTAGATGACGACGGCGGGGAAGACG GACTGACGCCGCCGTTTACAACGCCGTGTGGTTCTCCTCCGTATTACACTCCGTCGCCGTCTCCCTCTCCTGGCTGA
AA sequence Show only first row Show all	>Lus10016965 pacid=23172980 polypeptide=Lus10016965 locus=Lus10016965.g ID=Lus10016965.BGIv1.0 annot-version=v1.0 MAFINKLGLVLTAVFLLSLVLLTLQILYILWRRRRLHQSAQGDQKSTTTSPSMELLYLCFCGSWKNHQANRIEPTDVTVITSVAVDEELEEMLKLHQLYG LSRALFTIKEESEKEDDGDSVVVIQVDDDGGEDGLTPPFTTPCGSPPYYTPSPSPSPG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11640			unknown protein		Lus10016965 [exp]	0	1
AT3G11640			unknown protein		Lus10016964 [exp]	1.4	0.8975
AT1G26110		DCP5	decapping 5 (.1.2)		Lus10017885 [exp]	5.3	0.8651
AT1G62050			Ankyrin repeat family protein ...		Lus10002942 [exp]	5.5	0.8837
AT2G48020			Major facilitator superfamily ...		Lus10008179 [exp]	7.1	0.8699
AT5G65920			ARM repeat superfamily protein...		Lus10012491 [exp]	10.9	0.7827
AT5G41315	bHLH	MYC6.2, GL3	GLABROUS 3, GLABRA 3, basic he...		Lus10032267 [exp]	11.0	0.8584
AT5G05940		ATROPGEF5, ROPG...	ROP guanine nucleotide exchang...		Lus10009874 [exp]	15.7	0.8560
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10004962 [exp]	16.9	0.8394
AT4G30935	WRKY	ATWRKY32, WRKY3...	WRKY DNA-binding protein 32 (....		Lus10036268 [exp]	17.1	0.8241
AT5G15080			Protein kinase superfamily pro...		Lus10030796 [exp]	17.4	0.8539

Compare expression of checked genes

Lus10016965 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.