Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52500 310 / 3e-101 Eukaryotic aspartyl protease family protein (.1) AT5G45120 124 / 5e-31 Eukaryotic aspartyl protease family protein (.1) AT3G25700 120 / 1e-29 Eukaryotic aspartyl protease family protein (.1.2) AT2G42980 119 / 4e-29 Eukaryotic aspartyl protease family protein (.1) AT3G59080 114 / 2e-27 Eukaryotic aspartyl protease family protein (.1.2) AT2G03200 101 / 3e-23 Eukaryotic aspartyl protease family protein (.1) AT3G18490 96 / 3e-21 Eukaryotic aspartyl protease family protein (.1) AT1G25510 93 / 3e-20 Eukaryotic aspartyl protease family protein (.1) AT5G07030 88 / 1e-18 Eukaryotic aspartyl protease family protein (.1) AT3G61820 88 / 2e-18 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004204 [exp] 452 / 5e-157 AT3G52500 457 / 2e-158 Eukaryotic aspartyl protease family protein (.1) Lus10029408 [exp] 446 / 1e-154 AT3G52500 466 / 5e-162 Eukaryotic aspartyl protease family protein (.1) Lus10021293 [exp] 356 / 8e-121 AT3G52500 369 / 1e-125 Eukaryotic aspartyl protease family protein (.1) Lus10021292 [exp] 196 / 7e-62 AT3G52500 119 / 5e-33 Eukaryotic aspartyl protease family protein (.1) Lus10013324 [exp] 152 / 7e-44 AT3G52500 177 / 2e-53 Eukaryotic aspartyl protease family protein (.1) Lus10005211 [exp] 151 / 2e-43 AT3G52500 179 / 2e-54 Eukaryotic aspartyl protease family protein (.1) Lus10013325 [exp] 151 / 2e-42 AT3G52500 159 / 2e-45 Eukaryotic aspartyl protease family protein (.1) Lus10005212 [exp] 148 / 2e-41 AT3G52500 145 / 2e-40 Eukaryotic aspartyl protease family protein (.1) Lus10007466 [exp] 117 / 2e-28 AT4G16563 523 / 0.0 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G071900 [exp] 444 / 5e-154 AT3G52500 491 / 8e-172 Eukaryotic aspartyl protease family protein (.1) Potri.006G204700 [exp] 433 / 1e-149 AT3G52500 504 / 5e-177 Eukaryotic aspartyl protease family protein (.1) Potri.009G162400 [exp] 323 / 1e-106 AT3G52500 396 / 1e-134 Eukaryotic aspartyl protease family protein (.1) Potri.012G118000 [exp] 139 / 3e-36 AT5G45120 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.015G113100 [exp] 127 / 7e-32 AT5G45120 588 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G204600 [exp] 121 / 8e-30 AT3G59080 686 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.018G014600 [exp] 110 / 3e-26 AT5G10770 371 / 1e-124 Eukaryotic aspartyl protease family protein (.1) Potri.010G128200 [exp] 101 / 5e-23 AT1G25510 622 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G232600 [exp] 100 / 7e-23 AT5G10770 438 / 1e-150 Eukaryotic aspartyl protease family protein (.1) Potri.018G014500 [exp] 100 / 1e-22 AT5G10760 329 / 3e-108 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10016967 pacid=23172977 polypeptide=Lus10016967 locus=Lus10016967.g ID=Lus10016967.BGIv1.0 annot-version=v1.0 ATGGCTCCTTCACCTTCCACTCTATTCTCCTTCATCTTTATCCTCATCATTTCCACCGCCACCGCCGCCACCATCACCATCCCCCTCTCTCCTTACTCCT CCCCCTCCGCCGCTCCGCCTCTCCATGAAATCCTCTCTCACCTCGCTTCCACCTCCCTCTCTAGAGCTCTCAAACTCAAACACTCTTCCCCTCCTCCTTC TTCTTCTTCTTCTTCTCCCTCTTCTCTAGTCACCACCCCTCTCTTCCCCCGGAGCTACGGAGGGTACTCAATCTCCCTAAGCTTCGGAACTCCTCCGCAG ACCACCAAGTTCGTCATGGACACCGGAAGCACCCTCGTCTGGTTCCCCTGCACATCCCGCTACCTCTGTTCCCGCTGCAACTTCCGCAACGTCGATCCAA CCAACATTACCACATTCATCCCTAAGAAATCCTCCACCGCCAAGCTCACACCACAAAAAAAACCCCCACCCGCCAAGCTCATCGGCTGCAAGAACCCCAA ATGCCAGTGGATTTACGGCCCAAACGTTGCCAAAACCTGCTCCGGCTGCGATTCCGGCGCCAAAAGCGGACCCAATTGTACCCAAACTTGTCCTCCTTAC TCGATTCAGTACGGCTCCGGAGCTACGGCGGGCCTTCTTATCTCCGAAACGCTGGATCTCTCCGCTGACAAAACGGTCCCCGATTTCCTAGTCGGATGTT CGTTTCTTTCGATTCGGCAGCCGGAAGGAATCGCCGGATACGGCCGCAAGAATCCAGACTCTTCCAATTCGGCTTTCCAGACCTACTACTATTTGATGCT CCGGCAGATCCTCGTCGGAGGGAAGCGAGTGAAAGTTCCGTACAAGTATCTGGAGCCGAGCAAATCAGACGGCAACGGGGGCACGATTGTGGATTCCGGA ACGACTTTCAGTTACATGGAGTGCCCCGTTTACGAGGCGGTGGCGGCGGCGATTGTTAAGGAGATGTCTAGTTTTAATTACACGGTGGCGAAGGATATTC AGGATCTGGCCGGATTGAGGCCTTGCTTCGATGTTTCTAGCCAGGATAAGCTGAGGTTTCCTCAATTGAGCTTCAAGTTTAAAGGTGGAGCTAAGATGGA GCTTCCCGCGACGAATTATTTTGTGCTTGTGACCGAGAAGGTTATTTGTTTCACCATTGTTAGCGACAGTGTCGTCGGAAAAGGAGGAGGAGGCGGCGGC GGGCCGGCTATAATCTTGGGAAATTACCAGCAGCGGGATTATAATATCGAGTATGATTTGGAGAATGAGAGGTTTGGGTTCAAGAGGCAAAAATGTGCTT AG
AA sequence Show only first row Show all	>Lus10016967 pacid=23172977 polypeptide=Lus10016967 locus=Lus10016967.g ID=Lus10016967.BGIv1.0 annot-version=v1.0 MAPSPSTLFSFIFILIISTATAATITIPLSPYSSPSAAPPLHEILSHLASTSLSRALKLKHSSPPPSSSSSSPSSLVTTPLFPRSYGGYSISLSFGTPPQ TTKFVMDTGSTLVWFPCTSRYLCSRCNFRNVDPTNITTFIPKKSSTAKLTPQKKPPPAKLIGCKNPKCQWIYGPNVAKTCSGCDSGAKSGPNCTQTCPPY SIQYGSGATAGLLISETLDLSADKTVPDFLVGCSFLSIRQPEGIAGYGRKNPDSSNSAFQTYYYLMLRQILVGGKRVKVPYKYLEPSKSDGNGGTIVDSG TTFSYMECPVYEAVAAAIVKEMSSFNYTVAKDIQDLAGLRPCFDVSSQDKLRFPQLSFKFKGGAKMELPATNYFVLVTEKVICFTIVSDSVVGKGGGGGG GPAIILGNYQQRDYNIEYDLENERFGFKRQKCA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52500			Eukaryotic aspartyl protease f...		Lus10016967 [exp]	0	1
AT3G48460			GDSL-like Lipase/Acylhydrolase...		Lus10033302 [exp]	1.7	0.8973
AT3G62110			Pectin lyase-like superfamily ...		Lus10009972 [exp]	1.7	0.9189
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10019414 [exp]	2.8	0.8789
AT1G80510			Transmembrane amino acid trans...		Lus10003054 [exp]	3.5	0.9050
AT3G07080			EamA-like transporter family (...		Lus10011864 [exp]	5.0	0.8863
AT5G21070			unknown protein		Lus10025552 [exp]	5.5	0.8478
AT3G52500			Eukaryotic aspartyl protease f...		Lus10021293 [exp]	6.0	0.8743
AT1G64980			Nucleotide-diphospho-sugar tra...		Lus10024531 [exp]	9.4	0.8718
AT1G04430			S-adenosyl-L-methionine-depend...		Lus10011815 [exp]	10.4	0.8804
AT1G13860		QUL1	QUASIMODO2 LIKE 1 (.1.2.3.4)		Lus10036883 [exp]	11.3	0.8950

Compare expression of checked genes

Lus10016967 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.