Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27250 252 / 5e-82 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G42800 160 / 2e-46 M318, TT3, DFR dihydroflavonol 4-reductase (.1) AT1G61720 135 / 4e-37 BAN BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G35420 128 / 1e-34 TKPR1, DRL1 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) AT1G51410 126 / 6e-34 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G19440 125 / 1e-33 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G66800 124 / 3e-33 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09490 123 / 1e-32 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G09510 120 / 1e-31 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G45400 119 / 4e-31 BEN1 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021294 [exp] 470 / 1e-167 AT4G27250 351 / 4e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10041031 [exp] 165 / 3e-48 AT5G42800 499 / 2e-178 dihydroflavonol 4-reductase (.1) Lus10004028 [exp] 145 / 4e-41 AT2G45400 290 / 3e-96 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10039595 [exp] 131 / 1e-35 AT5G19440 462 / 6e-165 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10006141 [exp] 129 / 1e-34 AT4G35420 484 / 2e-173 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) Lus10020072 [exp] 127 / 5e-34 AT1G61720 404 / 2e-141 BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002300 [exp] 123 / 1e-32 AT5G19440 423 / 2e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002302 [exp] 122 / 4e-32 AT5G19440 413 / 2e-145 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10008668 [exp] 121 / 5e-32 AT5G19440 388 / 9e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G415500 [exp] 277 / 5e-92 AT4G27250 422 / 3e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G033600 [exp] 164 / 3e-48 AT5G42800 523 / 0.0 dihydroflavonol 4-reductase (.1) Potri.005G229500 [exp] 162 / 3e-47 AT5G42800 522 / 0.0 dihydroflavonol 4-reductase (.1) Potri.002G148000 [exp] 141 / 1e-39 AT2G45400 320 / 4e-108 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G087200 [exp] 137 / 4e-38 AT2G45400 317 / 6e-107 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147701 [exp] 136 / 2e-37 AT2G45400 341 / 1e-116 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147601 [exp] 135 / 2e-37 AT2G45400 341 / 1e-116 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147702 [exp] 132 / 6e-36 AT2G45400 317 / 4e-107 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147400 [exp] 130 / 1e-35 AT2G45400 344 / 7e-118 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G030700 [exp] 131 / 2e-35 AT1G61720 443 / 2e-156 BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10016968 pacid=23173008 polypeptide=Lus10016968 locus=Lus10016968.g ID=Lus10016968.BGIv1.0 annot-version=v1.0 ATGGAGTCGGTGGAGCAGAAAGGGAACAAGGAAGGAAACAGAAGAAGGTACTGTGTCACAGGCGCCAATGGCTACTTCGGATCTTATCTAGTAAAGCATC TCCTCCAATCCGGCGCCTCCGTTCACGCCACTCTCCGCAATCCATCTCACAACTCCGTCCAACGCCATCTCCTTCCCTTCTGGGAATCATCATCAGGCAG CAGCAACAACAACCGATTGCATCTCTTCAAAGCCGATCTCCAAGAGCCAGGCAGCTTCGACGAAGCCCTCAACGGCTGCGACGGTGTCTTCCACGTAGCG GCTTCAATGCAATTCCACATCCCTTCCGATCCACTACGTAGATACGAACATCATTCGCCCGGCAATCGAAGGAACACTCAATCTGCTCAAATCCTGCTCG AAATCATCCGTGAAAAGGGTAGACTTCACATCTTTAGTCAGCACCCTGCGGGTAAGAACCCGAACGGGTCGTGGAAACGGGTCGTTGACGAAACCTCCCA GGCTGGCGTTGACCAGACCCGGAGGAATAGAGCGAGCGGGTGGGTCTGCGCGCTCTCCAAGCTCCTAACGGAAGAAGCTGCGTTCAAGTACTGTAAAGAG AACGGGATTGTTTTGATCTCCGTTGTGACGTTCACGGTGGCTGGTCCGTTCTTCACTGAAACTGTTCCGTCCAACATTCGAGTTCTGTTGTGCCCCGTAA CGGGCGATTCAAGCTACTTGTCGATACTGTCGGCGGTGAGTGAGAGAATGAGTTCGATTGGTTTGGTTCACTCGGAGGATGTGCGTAGTGCGCATTTGTT CTTGATGGAGCATCCGAGAGCTCAAGGTAGATACTTGTGTTGTTCTGGGAGTTGCTTGCTGCCTGAATTGGTTGATCTACTGATTGAAGAACGGCATAAC ACTTGTTCAAATTGCTCAGAGGAGTAG
AA sequence Show only first row Show all	>Lus10016968 pacid=23173008 polypeptide=Lus10016968 locus=Lus10016968.g ID=Lus10016968.BGIv1.0 annot-version=v1.0 MESVEQKGNKEGNRRRYCVTGANGYFGSYLVKHLLQSGASVHATLRNPSHNSVQRHLLPFWESSSGSSNNNRLHLFKADLQEPGSFDEALNGCDGVFHVA ASMQFHIPSDPLRRYEHHSPGNRRNTQSAQILLEIIREKGRLHIFSQHPAGKNPNGSWKRVVDETSQAGVDQTRRNRASGWVCALSKLLTEEAAFKYCKE NGIVLISVVTFTVAGPFFTETVPSNIRVLLCPVTGDSSYLSILSAVSERMSSIGLVHSEDVRSAHLFLMEHPRAQGRYLCCSGSCLLPELVDLLIEERHN TCSNCSEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27250			NAD(P)-binding Rossmann-fold s...		Lus10016968 [exp]	0	1
AT1G49050			Eukaryotic aspartyl protease f...		Lus10042982 [exp]	12.9	0.8261
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Lus10009377 [exp]	13.6	0.8077
AT4G03230			S-locus lectin protein kinase ...		Lus10039725 [exp]	30.2	0.7608
AT1G78100		AUF1	auxin up-regulated f-box prote...		Lus10036451 [exp]	54.5	0.7550
AT1G62422			unknown protein		Lus10029957 [exp]	66.5	0.7655
AT1G49050			Eukaryotic aspartyl protease f...		Lus10032485 [exp]	103.0	0.7561
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Lus10029373 [exp]	117.1	0.7482
AT4G38260			Protein of unknown function (D...		Lus10012251 [exp]	117.7	0.7604
AT5G45280			Pectinacetylesterase family pr...		Lus10033301 [exp]	145.7	0.7242
AT5G64260		EXL2, MSJ1.10	EXORDIUM like 2 (.1)		Lus10036484 [exp]	204.8	0.7252

Compare expression of checked genes

Lus10016968 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.