Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06290 403 / 2e-143 2CPB, 2-CysPrxB ,2-Cys Prx B 2-CYS PEROXIREDOXIN B, 2-cysteine peroxiredoxin B (.1) AT3G11630 394 / 7e-140 Thioredoxin superfamily protein (.1) AT1G48130 100 / 9e-26 ATPER1 1-cysteine peroxiredoxin 1 (.1) AT3G26060 82 / 1e-18 ATPRXQ ,ATPRX Q peroxiredoxin Q, Thioredoxin superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021295 [exp] 535 / 0 AT5G06290 404 / 6e-144 2-CYS PEROXIREDOXIN B, 2-cysteine peroxiredoxin B (.1) Lus10018342 [exp] 97 / 5e-24 AT1G48130 338 / 2e-119 1-cysteine peroxiredoxin 1 (.1) Lus10004221 [exp] 99 / 6e-24 AT5G27720 182 / 2e-57 SM-like protein 4, embryo defective 1644, Small nuclear ribonucleoprotein family protein (.1) Lus10017112 [exp] 97 / 6e-24 AT1G48130 335 / 3e-118 1-cysteine peroxiredoxin 1 (.1) Lus10034892 [exp] 82 / 1e-18 AT3G26060 281 / 6e-97 peroxiredoxin Q, Thioredoxin superfamily protein (.1.2) Lus10033424 [exp] 81 / 2e-18 AT3G26060 278 / 1e-95 peroxiredoxin Q, Thioredoxin superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G072100 [exp] 431 / 2e-154 AT5G06290 390 / 3e-138 2-CYS PEROXIREDOXIN B, 2-cysteine peroxiredoxin B (.1) Potri.006G204900 [exp] 429 / 4e-154 AT5G06290 385 / 2e-136 2-CYS PEROXIREDOXIN B, 2-cysteine peroxiredoxin B (.1) Potri.008G099900 [exp] 94 / 4e-22 AT1G48130 322 / 2e-111 1-cysteine peroxiredoxin 1 (.1) Potri.018G063300 [exp] 82 / 1e-18 AT3G26060 275 / 1e-94 peroxiredoxin Q, Thioredoxin superfamily protein (.1.2) Potri.006G137500 [exp] 81 / 4e-18 AT3G26060 286 / 5e-99 peroxiredoxin Q, Thioredoxin superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00578 [flax] [poplar] AhpC-TSA AhpC/TSA family CL0172 [flax] [poplar] PF10417 [flax] [poplar] 1-cysPrx_C C-terminal domain of 1-Cys peroxiredoxin
Representative CDS sequence Show only first row Show all	>Lus10016969 pacid=23172991 polypeptide=Lus10016969 locus=Lus10016969.g ID=Lus10016969.BGIv1.0 annot-version=v1.0 ATGGCGTGCTCAGCTACCTCCGCCGCTCTCTTCTCCACCGCCAAACCTATGGCTACTCCCCACCTCTCCAAACCTTCCCAAACCCTAACCCCTTCCCCCA ACTCCCTATTCGGCCTCCGCAAGTCCCTCTCTTCCTTCTCCAATGCTCGCTCCTCTGTCCATGTCAGCCGCAGGAGCACCTTCGTCGTCAAAGCCTCCAG TGAGCTTCCGTTGGTGGGTAACGTAGCTCCTGATTTTGAGGCTGAAGCTGTTTTCGACCAGGAATTCATCAAGGTGAAACTCTCAGAGTACATTGGGAAG AAATATGTTGTCCTCTTCTTCTATCCATTGGACTTCACCTTTGTCTGTCCCACTGAAATCACTGCATTCAGTGACCGATACGCAGAGTTTGAGAAGATCA ACACTGAAGTCTTGGGTGTCTCAGTTGACAGTGTGTTCTCTCATCTTGCTTGGGTCCAAACTGATAGAAAATCAGGAGGCCTTGGTGATCTCAACTATCC CTTAGTATCTGATGTCACTAAATCAATCTCCAAATCTTTTGGAGTCCTTATTCCTGATCAGGGAATTGCTCTGAGAGGACTTTTCATCATCGACAAGGAG GGAGTAATCCAACACTCCACCATTAACAACCTTGCAATTGGAAGGAGTGTTGATGAGACAATGAGAACACTTCAGGCGTTGCAGTATGTCCAGGAGAACC CAGACGAGGTGTGCCCAGCTGGGTGGAAGCCGGGGGAGAAATCAATGAAGCCTGACCCAAAACTGAGCAAGGACTACTTTGCAGCAATATAG
AA sequence Show only first row Show all	>Lus10016969 pacid=23172991 polypeptide=Lus10016969 locus=Lus10016969.g ID=Lus10016969.BGIv1.0 annot-version=v1.0 MACSATSAALFSTAKPMATPHLSKPSQTLTPSPNSLFGLRKSLSSFSNARSSVHVSRRSTFVVKASSELPLVGNVAPDFEAEAVFDQEFIKVKLSEYIGK KYVVLFFYPLDFTFVCPTEITAFSDRYAEFEKINTEVLGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLVSDVTKSISKSFGVLIPDQGIALRGLFIIDKE GVIQHSTINNLAIGRSVDETMRTLQALQYVQENPDEVCPAGWKPGEKSMKPDPKLSKDYFAAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06290		2CPB, 2-CysPrxB...	2-CYS PEROXIREDOXIN B, 2-cyste...		Lus10016969 [exp]	0	1
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Lus10040147 [exp]	1.4	0.9666
AT3G54210			Ribosomal protein L17 family p...		Lus10006999 [exp]	2.0	0.9673
AT5G06290		2CPB, 2-CysPrxB...	2-CYS PEROXIREDOXIN B, 2-cyste...		Lus10021295 [exp]	2.2	0.9597
AT3G54210			Ribosomal protein L17 family p...		Lus10007002 [exp]	3.5	0.9633
AT2G29180			unknown protein		Lus10016512 [exp]	3.9	0.9349
AT5G52960			unknown protein		Lus10039319 [exp]	4.6	0.9291
AT5G54190		PORA	protochlorophyllide oxidoreduc...		Lus10018579 [exp]	4.9	0.9606
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Lus10021693 [exp]	5.5	0.9583
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Lus10000959 [exp]	5.7	0.9533
AT5G13510		EMB3136	EMBRYO DEFECTIVE 3136, Ribosom...		Lus10001982 [exp]	6.9	0.9348

Compare expression of checked genes

Lus10016969 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.