Plant FIBer expression Database

Lus10016973 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G52520 62 / 1e-12 unknown protein
AT5G06280 62 / 1e-12 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004216
[exp]
120 / 3e-35 AT3G52520 71 / 3e-16 unknown protein
Lus10029420
[exp]
114 / 7e-33 AT3G52520 64 / 1e-13 unknown protein
Lus10023997
[exp]
51 / 2e-08 ND 35 / 0.010
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G072500
[exp]
102 / 3e-28 AT5G06280 61 / 4e-12 unknown protein
Potri.006G205200
[exp]
97 / 8e-26 AT5G06280 52 / 5e-09 unknown protein
Potri.004G200600
[exp]
46 / 9e-07 ND /
Potri.004G178101
[exp]
44 / 7e-06 ND /
PFAM info
Representative CDS sequence
>Lus10016973 pacid=23173033 polypeptide=Lus10016973 locus=Lus10016973.g ID=Lus10016973.BGIv1.0 annot-version=v1.0
ATGGGTTCGCCAGAGCCGCTCCGCCGGCGAAATTCAATCGCCACCGCCGTCTCACTCCCGTCGAGACTTAGTCTCCGCACATCCAGCCTACCTCCTTCAA
ACGGATCGTCCTTCCCGTCTCCTTCCGACCTCGATTTCGAGCTCTACTCTTTCGAACAAGACTCTTCTGCCTACACATCCCTCAAGGACCTCCTCCCTTC
CTCCGCCCTCAACTCCCCCACCGTCGGCTCCTCCGTCTGCTACGGCTCCGCCTACGAGATATGCATCCGAAACCATCTCGTGAAGCACGCAGCTTGGGCT
TACCTCCAGCCTATGTCGTCCTCCCCTGGCTCCGATGGCCATATCAACTTCCTCCGACGCCTTTGGTTGAGCCTCCGGAATCCCATCTCGGCTTGCTTCC
GATTTGTCGAATTGCATCTGATTCCGGGGATTTCTCGCACTCTCAGCAGGATTTTCAGCTCAATTTGGGTTGGTGCGTAA
AA sequence
>Lus10016973 pacid=23173033 polypeptide=Lus10016973 locus=Lus10016973.g ID=Lus10016973.BGIv1.0 annot-version=v1.0
MGSPEPLRRRNSIATAVSLPSRLSLRTSSLPPSNGSSFPSPSDLDFELYSFEQDSSAYTSLKDLLPSSALNSPTVGSSVCYGSAYEICIRNHLVKHAAWA
YLQPMSSSPGSDGHINFLRRLWLSLRNPISACFRFVELHLIPGISRTLSRIFSSIWVGA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G06280 unknown protein Lus10016973
[exp]
0 1
AT1G30090 Galactose oxidase/kelch repeat... Lus10042824
[exp]
5.0 0.8882
AT2G46860 ATPPA3 pyrophosphorylase 3 (.1) Lus10041767
[exp]
5.5 0.8738
AT4G27880 Protein with RING/U-box and TR... Lus10022405
[exp]
8.6 0.8773
AT5G21090 Leucine-rich repeat (LRR) fami... Lus10026751
[exp]
10.9 0.8456
AT3G11400 ATEIF3G1, EIF3G... eukaryotic translation initiat... Lus10028823
[exp]
11.1 0.8699
AT3G12800 SDRB, DECR short-chain dehydrogenase-redu... Lus10017129
[exp]
15.0 0.8690
AT2G15760 Protein of unknown function (D... Lus10027912
[exp]
19.7 0.8191
AT2G25280 unknown protein Lus10001950
[exp]
22.4 0.8619
AT2G31880 SOBIR1, EVR SUPPRESSOR OF BIR1 1, EVERSHED... Lus10041953
[exp]
23.5 0.8408
AT1G11910 ATAPA1, APA1 aspartic proteinase A1 (.1) Lus10043112
[exp]
24.4 0.8555

Lus10016973 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.