Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11620 186 / 1e-58 BAS1 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021300 [exp] 351 / 3e-123 AT3G11620 354 / 2e-122 alpha/beta-Hydrolases superfamily protein (.1.2.3.4) Lus10004214 [exp] 265 / 1e-89 AT3G11620 309 / 4e-105 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G072700 [exp] 208 / 2e-67 AT3G11620 411 / 3e-145 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF10230 [flax] [poplar] LIDHydrolase Lipid-droplet associated hydrolase
Representative CDS sequence Show only first row Show all	>Lus10016976 pacid=23172937 polypeptide=Lus10016976 locus=Lus10016976.g ID=Lus10016976.BGIv1.0 annot-version=v1.0 ATGGAAACACTGAGGCAAAAGAGAGATAAGGTGATATACTTCGTCGGCTTATACCCTTTCATCATGTCAAATCCACTATCAAAGAAGCAAGCTAGTATTG CAAAAGTTTCCAGATCCGCTTTTCTGAGTGGCCTGATGAGTTTCATGGTAGCGTTTATCGGAATTCTACCTAAGTGGCTTGCCAGGTACATGGTGTTAAA GTATATTGGCAACAGCACATGGTCTAATTCAGCTGTTGAGACTGCTCAAGCTTATTTGCTGAAGCTTTCACAGGCACCAGATTGGGAATTCATGAGAGAA AACCACAGTAGAATGGCATTCTTGTTTGGTGTTGATGATCACTGGGGGCCGTTGCAAGTATATGAAGATATCGCAAAACACGTCCCTGAAATGACTTTAG CAATCGAAAGAGAAGGCCATTCCCACAGTTTCTGCTGCACTGAGGCTGGCTCGGTGTGGGTTGCTCGACATGTTGCTAGCTTGATACAGAATCAGGCGAC CTCAGTGGTAGCAGCGGCAGCAGATGGCGAGAGGCTCACCCACACTGACATTGCATAG
AA sequence Show only first row Show all	>Lus10016976 pacid=23172937 polypeptide=Lus10016976 locus=Lus10016976.g ID=Lus10016976.BGIv1.0 annot-version=v1.0 METLRQKRDKVIYFVGLYPFIMSNPLSKKQASIAKVSRSAFLSGLMSFMVAFIGILPKWLARYMVLKYIGNSTWSNSAVETAQAYLLKLSQAPDWEFMRE NHSRMAFLFGVDDHWGPLQVYEDIAKHVPEMTLAIEREGHSHSFCCTEAGSVWVARHVASLIQNQATSVVAAAADGERLTHTDIA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11620		BAS1	alpha/beta-Hydrolases superfam...		Lus10016976 [exp]	0	1
AT1G60670			Protein of unknown function (D...		Lus10013072 [exp]	8.1	0.7983
AT5G64460			Phosphoglycerate mutase family...		Lus10020467 [exp]	9.2	0.7562
AT2G17280			Phosphoglycerate mutase family...		Lus10001381 [exp]	12.0	0.7765
AT1G25260			Ribosomal protein L10 family p...		Lus10001072 [exp]	14.9	0.7842
AT5G64560		MRS2-2, ATMGT9	magnesium transporter 9 (.1.2)		Lus10041169 [exp]	15.7	0.7639
AT1G54680			unknown protein		Lus10033821 [exp]	17.5	0.7852
AT4G39630			unknown protein		Lus10036631 [exp]	17.7	0.7036
AT5G46030			unknown protein		Lus10025438 [exp]	18.7	0.7645
AT1G31812		ACBP6, ACBP	acyl-CoA-binding protein 6 (.1...		Lus10021246 [exp]	21.9	0.7416
AT5G42290			transcription activator-relate...		Lus10034574 [exp]	30.6	0.7549

Compare expression of checked genes

Lus10016976 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.