Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04820 87 / 2e-20 OFP ATOFP13, OFP13 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) AT2G36050 81 / 4e-18 OFP ATOFP15, OFP15 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 15, ovate family protein 15 (.1) AT3G52540 74 / 4e-15 OFP ATOFP18, OFP18 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 18, ovate family protein 18 (.1) AT1G79960 62 / 3e-11 OFP ATOFP14, OFP14 ovate family protein 14 (.1) AT2G18500 59 / 6e-10 OFP ATOFP7, OFP7 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1) AT5G19650 56 / 3e-09 OFP ATOFP8, OFP8 ovate family protein 8 (.1) AT4G14860 55 / 4e-09 OFP ATOFP11 ovate family protein 11 (.1) AT5G22240 54 / 8e-09 OFP ATOFP10, OFP10 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 10, Ovate family protein (.1) AT1G05420 53 / 3e-08 OFP ATOFP12, OFP12 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 12, ovate family protein 12 (.1) AT2G30400 53 / 6e-08 OFP ATOFP2, OFP2 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 2, ovate family protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021303 [exp] 280 / 7e-94 AT5G04820 103 / 8e-26 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Lus10043433 [exp] 78 / 7e-17 AT5G04820 146 / 2e-42 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Lus10034150 [exp] 77 / 1e-16 AT5G04820 134 / 8e-38 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Lus10010554 [exp] 62 / 2e-11 AT1G05420 104 / 2e-27 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 12, ovate family protein 12 (.1) Lus10006120 [exp] 61 / 2e-10 AT1G05420 103 / 6e-26 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 12, ovate family protein 12 (.1) Lus10006912 [exp] 56 / 2e-09 AT1G05420 112 / 2e-30 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 12, ovate family protein 12 (.1) Lus10035891 [exp] 57 / 3e-09 AT1G79960 166 / 2e-48 ovate family protein 14 (.1) Lus10043406 [exp] 55 / 4e-09 AT5G04820 64 / 1e-12 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Lus10014677 [exp] 55 / 6e-09 AT1G05420 109 / 2e-29 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 12, ovate family protein 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G072900 [exp] 135 / 1e-38 AT5G04820 153 / 2e-45 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Potri.006G205500 [exp] 125 / 2e-34 AT5G04820 159 / 1e-47 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Potri.008G017500 [exp] 106 / 7e-28 AT5G04820 163 / 5e-50 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Potri.010G241500 [exp] 101 / 4e-26 AT5G04820 164 / 3e-50 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Potri.009G161600 [exp] 84 / 2e-19 AT5G04820 110 / 2e-29 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Potri.005G211300 [exp] 74 / 2e-15 AT4G14860 92 / 5e-23 ovate family protein 11 (.1) Potri.008G153500 [exp] 70 / 4e-14 AT4G14860 103 / 1e-27 ovate family protein 11 (.1) Potri.010G087200 [exp] 69 / 1e-13 AT4G14860 101 / 3e-26 ovate family protein 11 (.1) Potri.002G051200 [exp] 69 / 1e-13 AT4G14860 62 / 1e-11 ovate family protein 11 (.1) Potri.001G180400 [exp] 64 / 1e-11 AT1G79960 137 / 2e-38 ovate family protein 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04844 [flax] [poplar] Ovate Transcriptional repressor, ovate
Representative CDS sequence Show only first row Show all	>Lus10016979 pacid=23173019 polypeptide=Lus10016979 locus=Lus10016979.g ID=Lus10016979.BGIv1.0 annot-version=v1.0 ATGTTGGGGAAGAAGAAATTAAGATTAAATCCCATCCCTTCCTTTCTCTTCTCCAAATCCAACTCCTCAGATCAATGCTCTTCTTCTCCTTCCTCTTCCT CATCCTCTGTTAAATCATCCTCTGTTTCCTCCTCCTCCTGGCCTTGGACTCCAAACTACTACTACTGCCACCAACAGCCTCGCACTCTCTCCTTCCGCAC CATCACCTCCGCCGACATGTTGGATACTAAATACCCACCAGAATCTGGACCTGGGTCTGGACCCAGCAAGCCCGATTCGTCGTTTTTCCCCAACACCCCT GCCGTCGCCAGCGACGGCGGTGAAGACCCGGCAGTCGAGAGCGTGATTCGCGGCGCGAAATCGGAGCGGTTGTTCTTCTCTCCTGGAGAGACTAGCTCAT CGTTACTGCAAGATTCAGAAAAGGGGAAGATCGGCGGCGACGGGAGTGGAGGAGAGGCGGGGGATGCTCTGTTTTCGATTAAGGAGGGCGGAGAAGAAGC CGGAGCGGTGGCGGTGGGGGTGGATTCTAAGGATCCGTTCGAGGATTTCAAGAACTCGATGGTGGAGATGGTGGAGGCTCACGGGTTGAAGGATTGGGAG TCTTTAGAGAATCTATTGAGCTGCTACCTCAGGGTTAATAAGAAGAGCAACCACGGATACATCGTCGGGGCTTTCGTTGATTTGCTCGTCAGTTTGCCGC CGTTTGGTCCTAAATCGACTCCGGGCGCGGGGGTGGCGGGGCGGGGGGAGGAGGGAGGGGTGTGA
AA sequence Show only first row Show all	>Lus10016979 pacid=23173019 polypeptide=Lus10016979 locus=Lus10016979.g ID=Lus10016979.BGIv1.0 annot-version=v1.0 MLGKKKLRLNPIPSFLFSKSNSSDQCSSSPSSSSSSVKSSSVSSSSWPWTPNYYYCHQQPRTLSFRTITSADMLDTKYPPESGPGSGPSKPDSSFFPNTP AVASDGGEDPAVESVIRGAKSERLFFSPGETSSSLLQDSEKGKIGGDGSGGEAGDALFSIKEGGEEAGAVAVGVDSKDPFEDFKNSMVEMVEAHGLKDWE SLENLLSCYLRVNKKSNHGYIVGAFVDLLVSLPPFGPKSTPGAGVAGRGEEGGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04820	OFP	ATOFP13, OFP13	ARABIDOPSIS THALIANA OVATE FAM...		Lus10016979 [exp]	0	1
AT4G27870			Vacuolar iron transporter (VIT...		Lus10035731 [exp]	10.7	0.7627
AT3G23390			Zinc-binding ribosomal protein...		Lus10013436 [exp]	10.7	0.7737
AT3G52570			alpha/beta-Hydrolases superfam...		Lus10021315 [exp]	13.6	0.7639
AT3G61110		ARS27A	ribosomal protein S27 (.1)		Lus10035122 [exp]	19.0	0.7406
AT5G56670			Ribosomal protein S30 family p...		Lus10028808 [exp]	19.2	0.7536
AT4G31820		MAB4, ENP, NPY1	NAKED PINS IN YUC MUTANTS 1, M...		Lus10042414 [exp]	21.2	0.7240
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Lus10010538 [exp]	22.4	0.6689
AT1G53590		NTMCTYPE6.1 ,NT...	Calcium-dependent lipid-bindin...		Lus10026192 [exp]	23.8	0.7448
AT3G18380		SHH2	SAWADEE homeodomain homolog 2,...		Lus10013684 [exp]	30.5	0.7465
AT1G26880			Ribosomal protein L34e superfa...		Lus10036750 [exp]	34.6	0.7360

Compare expression of checked genes

Lus10016979 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.