Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22250 332 / 7e-114 AtCAF1b CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G44260 320 / 8e-109 AtCAF1a CCR4- associated factor 1a, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT5G10960 273 / 1e-90 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT2G32070 264 / 6e-87 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G80780 263 / 2e-86 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2.3) AT1G15920 250 / 3e-81 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2) AT1G61470 131 / 1e-35 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G06450 132 / 2e-35 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G27820 119 / 1e-30 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G27890 109 / 2e-27 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021304 [exp] 565 / 0 AT5G22250 335 / 8e-116 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10004212 [exp] 459 / 1e-163 AT3G44260 336 / 1e-116 CCR4- associated factor 1a, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10034180 [exp] 343 / 7e-118 AT5G22250 410 / 4e-146 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10018330 [exp] 275 / 4e-91 AT2G32070 444 / 3e-159 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10017123 [exp] 271 / 7e-90 AT2G32070 447 / 1e-160 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10003635 [exp] 268 / 1e-88 AT2G32070 435 / 6e-156 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10036291 [exp] 267 / 4e-88 AT2G32070 432 / 9e-155 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10029417 [exp] 227 / 1e-74 AT5G22250 164 / 2e-51 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10000327 [exp] 147 / 3e-41 AT1G06450 174 / 1e-51 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G205600 [exp] 383 / 2e-133 AT5G22250 302 / 4e-103 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.016G073000 [exp] 367 / 2e-127 AT3G44260 322 / 5e-111 CCR4- associated factor 1a, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.004G200400 [exp] 346 / 3e-119 AT5G22250 419 / 3e-149 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.009G161500 [exp] 338 / 4e-116 AT5G22250 387 / 1e-136 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.001G046700 [exp] 274 / 6e-91 AT2G32070 472 / 2e-170 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.003G181100 [exp] 269 / 6e-89 AT1G80780 468 / 1e-168 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2.3) Potri.006G262500 [exp] 265 / 3e-87 AT2G32070 443 / 5e-159 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.018G020900 [exp] 264 / 4e-87 AT2G32070 441 / 2e-158 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.006G187200 [exp] 263 / 9e-87 AT2G32070 403 / 2e-143 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.001G040400 [exp] 258 / 5e-85 AT5G22250 253 / 4e-84 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF04857 [flax] [poplar] CAF1 CAF1 family ribonuclease
Representative CDS sequence Show only first row Show all	>Lus10016980 pacid=23173006 polypeptide=Lus10016980 locus=Lus10016980.g ID=Lus10016980.BGIv1.0 annot-version=v1.0 ATGAACAATATCCCCACGTTTGTTGCCTTCTCCTTTTCCGTTACCCTTTTCCTATATAACTCCGTCGTCTGCCATGTTCCTCCGCCTCCTCCGCCTCTCT GGGCTGTTCGTTTCCATCGCCAACGAAGTCACCTCGGATCTTCGCCGCCTCTTCGTCCATCTCTGGATGCGCTCTGTTTTCAGACCGATCCTCCTCTCCC CCAACAATCAGCCATGTCTAAATCCACCGGCGAAGAGTCGATCGCCTCCCTGCCGCCGCCTCTTCCTTCTTCGCCCTGCCGACCTGTCGTGATCCGATCG GTGTGGGCGGAGAATCTCGTATCGGAGTTCTTGGTAATCCGGAAAGTCGTAGAAAAGTACCCGCTGATTTCCATGGACACGGAGTTCCCAGGCGTTGTGA TTCGCGCGCAGGGCGTCGAACAAAGTCATCGATCGCAGGATCCAACGGGAAGGTATGCGATCCTCAAGGCCAACGTTGATGCGCTTAAACTGATCCAGGT AGGGCTCACGCTCGCCAATAAGGAAGGGAATTTGCCGGATTTTGGAACTGGGAGTTGTTATATATGGGAATTCAATTTTAGGGATTTTGATGTGTCTTGC GACTATCATGCTCATGACTCCGTTGACATGTTGAGGAGGCAAGGGATGGATTTCGAGAAAAACAGAAAGGAAGGAGTTGAGGCTGTGAAATTTGCCGAGC TGATGATGTCGTCGGGACTGGTGTTGGATCCCTCAGTTAGTTGGGTCACATTTCATAGCGCTTATGATTTTGGTTACTTGGTGAAGTGTTTGACTCAGAA GCCTTTGCCCGATGGCTTGACTGAGTTTCTTGATTTGGTGAGAATGTTCTTTGGGGACAACGTTTATGACGTTAAGCATTTCATGAAGTTTGGGGCGAAC TTGTTTGGTGGTCTTGATAGGACATGCAAGACTTTGGGTGTGGAGCGGGTCACTGGGAAGAGTCACCAAGCTGGTTCAGATAGCTTGGCGACACTCCACG CCTTTCAGAAAATGAGAGAGAAGTACTTCAATGGTAGGGAGGATGGAGCAATAGAAAAGTACGCAAATGTTTTATATGGATTAGAGCTGCTAACTTCATA G
AA sequence Show only first row Show all	>Lus10016980 pacid=23173006 polypeptide=Lus10016980 locus=Lus10016980.g ID=Lus10016980.BGIv1.0 annot-version=v1.0 MNNIPTFVAFSFSVTLFLYNSVVCHVPPPPPPLWAVRFHRQRSHLGSSPPLRPSLDALCFQTDPPLPQQSAMSKSTGEESIASLPPPLPSSPCRPVVIRS VWAENLVSEFLVIRKVVEKYPLISMDTEFPGVVIRAQGVEQSHRSQDPTGRYAILKANVDALKLIQVGLTLANKEGNLPDFGTGSCYIWEFNFRDFDVSC DYHAHDSVDMLRRQGMDFEKNRKEGVEAVKFAELMMSSGLVLDPSVSWVTFHSAYDFGYLVKCLTQKPLPDGLTEFLDLVRMFFGDNVYDVKHFMKFGAN LFGGLDRTCKTLGVERVTGKSHQAGSDSLATLHAFQKMREKYFNGREDGAIEKYANVLYGLELLTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Lus10016980 [exp]	0	1
AT4G03000			RING/U-box superfamily protein...		Lus10021953 [exp]	3.0	0.8225
AT4G03000			RING/U-box superfamily protein...		Lus10041245 [exp]	3.7	0.8318
AT1G66340		AtETR1, EIN1, E...	ETHYLENE RESPONSE 1, ETHYLENE ...		Lus10020778 [exp]	6.5	0.7957
AT4G25672		CPuORF12	conserved peptide upstream ope...		Lus10027512 [exp]	9.3	0.8316
AT1G77590		LACS9	long chain acyl-CoA synthetase...		Lus10018178 [exp]	9.8	0.8169
AT3G09030			BTB/POZ domain-containing prot...		Lus10004834 [exp]	11.0	0.7863
AT2G16770	bZIP	bZIP23	Basic-leucine zipper (bZIP) tr...		Lus10014121 [exp]	11.1	0.7350
AT2G31820			Ankyrin repeat family protein ...		Lus10027074 [exp]	14.1	0.7968
AT5G18400			Cytokine-induced anti-apoptosi...		Lus10010213 [exp]	14.3	0.7852
AT3G27320			alpha/beta-Hydrolases superfam...		Lus10037056 [exp]	17.6	0.7866

Compare expression of checked genes

Lus10016980 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.