Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61860 50 / 2e-06 ATRSP31, At-RS31 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G37340 49 / 4e-06 RSZ33, ATRSZ33, RS2Z33, AT-RS2Z33 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3) AT3G53500 49 / 7e-06 RSZ32, RS2Z32, At-RS2Z arginine/serine-rich zinc knuckle-containing protein 32, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2) AT5G54900 48 / 1e-05 ATRBP45A RNA-binding protein 45A (.1) AT4G27000 47 / 2e-05 ATRBP45C RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G47500 46 / 7e-05 ATRBP47C' RNA-binding protein 47C' (.1) AT1G47490 46 / 8e-05 ATRBP47C RNA-binding protein 47C (.1.2) AT2G46610 45 / 8e-05 RS31a, At-RS31a arginine/serine-rich splicing factor 31a, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G19350 44 / 0.0003 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029414 [exp] 576 / 0 AT2G37340 56 / 2e-08 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3) Lus10004210 [exp] 523 / 5e-179 AT2G37340 52 / 6e-07 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3) Lus10031277 [exp] 49 / 8e-06 AT5G19350 558 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10031844 [exp] 48 / 2e-05 AT5G19350 556 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10038883 [exp] 46 / 7e-05 AT4G25500 206 / 7e-64 ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, arginine/serine-rich splicing factor 40, arginine/serine-rich splicing factor 35 (.1.2.3.4) Lus10027911 [exp] 43 / 0.0005 AT1G49600 411 / 3e-143 RNA-binding protein 47A (.1) Lus10030226 [exp] 42 / 0.0007 AT3G61860 320 / 8e-111 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10012071 [exp] 43 / 0.0008 AT1G49600 442 / 2e-155 RNA-binding protein 47A (.1) Lus10012070 [exp] 43 / 0.0009 AT1G49600 470 / 5e-165 RNA-binding protein 47A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G205800 [exp] 387 / 2e-125 AT2G37340 52 / 6e-07 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3) Potri.014G076600 [exp] 49 / 6e-06 AT4G25500 255 / 3e-84 ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, arginine/serine-rich splicing factor 40, arginine/serine-rich splicing factor 35 (.1.2.3.4) Potri.004G017200 [exp] 49 / 6e-06 AT1G11650 423 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.017G059000 [exp] 46 / 8e-06 AT4G13850 134 / 9e-42 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.002G153600 [exp] 47 / 1e-05 AT4G25500 264 / 7e-88 ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, arginine/serine-rich splicing factor 40, arginine/serine-rich splicing factor 35 (.1.2.3.4) Potri.001G423400 [exp] 47 / 4e-05 AT4G27000 474 / 2e-166 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G133600 [exp] 46 / 5e-05 AT4G25500 316 / 2e-106 ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, arginine/serine-rich splicing factor 40, arginine/serine-rich splicing factor 35 (.1.2.3.4) Potri.011G138400 [exp] 46 / 6e-05 AT4G27000 463 / 1e-162 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.007G028300 [exp] 46 / 7e-05 AT2G18510 453 / 4e-160 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.018G002300 [exp] 46 / 7e-05 AT1G17370 461 / 1e-161 oligouridylate binding protein 1B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0511 [flax] [poplar] Retroviral_zf PF00098 [flax] [poplar] zf-CCHC Zinc knuckle CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10016981 pacid=23172996 polypeptide=Lus10016981 locus=Lus10016981.g ID=Lus10016981.BGIv1.0 annot-version=v1.0 ATGTCGTTATTCATTGGTAATTTATCTCCCCGGACTCCCAAAGATGAACTTGAGCGCGTTTTTGGAAGGTTTGGTCAGTGTGACATACGAATGAAAGATG GATATGGATTTGTGGTATATGAGTTCCCCCCTAATGCAGAGAAAGCCCTGAAATCGTTAGAAAATAAGTACATTTGCGGGCTGTCATTAAACCTCTCATG GTCAAAGAAACAACCTAGACCATTCAACAAACATGGAAGGCCTGTTAGAAATTATGAGTCTCAGCCCGGGAGATATTCTACAAGAGATGCAGGGTATGGT CGAGGCAAATTGGATTCACCAGGTCGACAAGATTATAGAAAGCTTGTTAAGCATGAAGATGAAAGTGGGAGAAGGTTCCATGCCAATATTCTTGATGAGG GGACAGCTTACCAACATGATGAGATAAAAGATTTTACTGGTCAAGAACATCACAGTTACAGGGAACATGAATTGGTTGATAATGATAGATGGGATCTCCA ATTCCATGACATGCCAAATGAAAGTGATGTCAATGACCGAGTGGATTCTGGCAGGTATGAACCTTTCCAAGACAGAAACGATGATGGTAACCCTCAAATG GTCCATTCTGGCAGGTCTCCTTCTCAACGGAACTTCCAAGAGGATGTAGGGCGAAATTACATTGGTGAAAGAAATTTCAAGCGCAATGATGTATCATGTT ATGGCTGTGGGGGGCTTGGTCACAAAATGCGTAATTGTCCTGAGAAAATTTTTCTGAAGAGAAAGTGGTCTAAGTTTGACCAAAGAGGTGACAATTATGT GAATCGGCAAGGGAGAAGTGAAGATCAGATGGAAATACTTGAATGGTCAAGGGAAACAGAACCACGGAGGAGTATCATTCGAACACAGAGAAGTGGAAAT GGTGTAAAATTATCTGGTTCAAGAAAGGATCAGACATTGGCGAAGTGCAATATCTCTCCTGTTGGAAAGGAAGTTGGCTCATTTCAGAAAGAGGATCATG CTAGAAAAAAGCGAAGCAGGAACGGAAGTGAATCACCTGAAAGACGTAGCACTAGGAGAGGAAGAAAGTCAGTTTCATCTTCTCATGATTCCGGTCACCC GGGATCCAGATCATTAGCTAAGCCCTCAAAACACAGTCAAATGTCTCATGTTCACTCTAACTCGAGGTCAATTTCATCTAGAGCTCATTCACCATCCTCT GATACAATGTCTGGTGTGACACCACATAGGTTCAAGAATGCTAGGTCAAGATCTAGATCCAGCTCTCCTACTTATTTGTCTTTATCTGTGTCACTTGGAC AGCCTACACCATCTTCTGATAAGGCTCGGTTGAATCTGAAAAGTTCATTGGCCGAAATCAGAACTGCAGAATCGAGGGAGATCTTAGTCGAAAAGGAACT GGCAATGGAAGCTAATATAGAGGTGGAGAATGCTGAACCTGCAAATGAAATGACACAGCCAAGTCCTGTGTCATCTTTCAATATAGAAGGTCAAGTTGGA AAAGACCTGCCTCTGGTTTACAGTGGAAAAGAGACATTGTTCGCATTACCCAATGTTGGAATAAATTATAGCACATCGCTAACAGAAAATGCAACATCTG TTGCTCCAAGTTCATCACTGCAGAGGCATATAGAGATAACTACTGAAGATTCAAGTCCGGTAATTGAAAAGAATGTGTCATGTCCTATATTGAAACCAGA GTTTGAACTTCCAGTTAAATCAGGCACCTCCAATTCAATAGCTCTTTCCTCAGAAGATTTGTGTTTAGTTCTAAAGCATTATTATCCTGATACTCCAGAT GAAGGTGAAATGAATCTGAACCCTGAGGCGTACTTTGGTTCTACTCGTTTGTGGCCTTGGGAACTTATCTATTATAGGAGGTTGAAGAAAAGTCCTATAT CCATTGAAAACTATGCTAAGCGGGTGGAGCAAAATCATGAATATCATATTGTTGACAAGTATATTAGAAGCAGCAGTGGATGGGGGGAATTGGACAAAAG GAATGAGTAG
AA sequence Show only first row Show all	>Lus10016981 pacid=23172996 polypeptide=Lus10016981 locus=Lus10016981.g ID=Lus10016981.BGIv1.0 annot-version=v1.0 MSLFIGNLSPRTPKDELERVFGRFGQCDIRMKDGYGFVVYEFPPNAEKALKSLENKYICGLSLNLSWSKKQPRPFNKHGRPVRNYESQPGRYSTRDAGYG RGKLDSPGRQDYRKLVKHEDESGRRFHANILDEGTAYQHDEIKDFTGQEHHSYREHELVDNDRWDLQFHDMPNESDVNDRVDSGRYEPFQDRNDDGNPQM VHSGRSPSQRNFQEDVGRNYIGERNFKRNDVSCYGCGGLGHKMRNCPEKIFLKRKWSKFDQRGDNYVNRQGRSEDQMEILEWSRETEPRRSIIRTQRSGN GVKLSGSRKDQTLAKCNISPVGKEVGSFQKEDHARKKRSRNGSESPERRSTRRGRKSVSSSHDSGHPGSRSLAKPSKHSQMSHVHSNSRSISSRAHSPSS DTMSGVTPHRFKNARSRSRSSSPTYLSLSVSLGQPTPSSDKARLNLKSSLAEIRTAESREILVEKELAMEANIEVENAEPANEMTQPSPVSSFNIEGQVG KDLPLVYSGKETLFALPNVGINYSTSLTENATSVAPSSSLQRHIEITTEDSSPVIEKNVSCPILKPEFELPVKSGTSNSIALSSEDLCLVLKHYYPDTPD EGEMNLNPEAYFGSTRLWPWELIYYRRLKKSPISIENYAKRVEQNHEYHIVDKYIRSSSGWGELDKRNE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61860		ATRSP31, At-RS3...	arginine/serine-rich splicing ...		Lus10016981 [exp]	0	1
AT4G28010			Tetratricopeptide repeat (TPR)...		Lus10033639 [exp]	3.7	0.8123
AT4G19650			Mitochondrial transcription te...		Lus10038336 [exp]	5.5	0.8135
AT5G16860			Tetratricopeptide repeat (TPR)...		Lus10020652 [exp]	11.2	0.7415
AT1G74630			Tetratricopeptide repeat (TPR)...		Lus10024222 [exp]	12.7	0.8126
AT5G64420			DNA polymerase V family (.1)		Lus10037435 [exp]	14.5	0.8350
AT3G27550			RNA-binding CRS1 / YhbY (CRM) ...		Lus10022280 [exp]	15.0	0.8295
AT3G26410		TRM11, AtTRM11	tRNA modification 11, methyltr...		Lus10018149 [exp]	16.9	0.8250
AT1G52380			NUP50 (Nucleoporin 50 kDa) pro...		Lus10038663 [exp]	19.2	0.7875
AT4G08210			Pentatricopeptide repeat (PPR-...		Lus10028082 [exp]	21.0	0.7720
AT2G37320			Tetratricopeptide repeat (TPR)...		Lus10025277 [exp]	25.9	0.7727

Compare expression of checked genes

Lus10016981 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.