Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06270 114 / 1e-33 unknown protein AT3G11600 91 / 1e-24 unknown protein AT5G22270 57 / 1e-11 BIN4 ? unknown protein AT3G52561 49 / 1e-08 unknown protein AT1G16500 42 / 2e-05 unknown protein AT1G79160 38 / 0.0005 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021305 [exp] 184 / 2e-61 AT5G06270 122 / 8e-37 unknown protein Lus10004209 [exp] 107 / 5e-31 AT5G06270 100 / 4e-28 unknown protein Lus10029413 [exp] 107 / 5e-31 AT5G06270 100 / 4e-28 unknown protein Lus10043404 [exp] 78 / 3e-19 AT3G11600 78 / 1e-19 unknown protein Lus10034181 [exp] 73 / 1e-17 AT3G11600 87 / 3e-23 unknown protein Lus10002577 [exp] 42 / 1e-05 AT2G33510 99 / 1e-26 unknown protein Lus10001804 [exp] 41 / 5e-05 AT2G33510 145 / 8e-44 unknown protein Lus10031179 [exp] 38 / 0.0008 AT1G79160 197 / 5e-63 unknown protein Lus10031755 [exp] 38 / 0.001 AT1G79160 201 / 1e-64 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G073400 [exp] 119 / 8e-36 AT5G06270 115 / 2e-34 unknown protein Potri.006G206000 [exp] 116 / 9e-35 AT5G06270 108 / 8e-32 unknown protein Potri.009G161400 [exp] 86 / 1e-22 AT5G06270 91 / 9e-25 unknown protein Potri.004G200300 [exp] 69 / 3e-16 AT5G06270 71 / 7e-17 unknown protein Potri.010G241400 [exp] 54 / 5e-10 AT3G11600 56 / 7e-11 unknown protein Potri.005G096800 [exp] 44 / 8e-06 AT1G79160 209 / 7e-68 unknown protein Potri.007G067300 [exp] 39 / 0.0003 AT1G79160 164 / 3e-50 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016982 pacid=23172950 polypeptide=Lus10016982 locus=Lus10016982.g ID=Lus10016982.BGIv1.0 annot-version=v1.0 ATGAGCAGAAGGAACAACAGCAACAACCCAAAGCTGGAGCTGAAGCTAAACCTGTCGCCACCCAGAGGCGGGAACAACAACAACTTTATGAGGGTAGATT CACCTAGCCGATCGGCCACGGTGTCCCCGACTTCGCCGCCGAGCTCCTGTGTGTCGTCTGAGATGAACCAGGATGACAGCAGCGGCGGGTTGAGGTATTC CAACAGCCCTGAAGCAACTTCCATGGTTCTTGTCGGTTGTCCGAGGTGTCTTATGTACGTGATGCTCTCTGAGGATGATCCCCGATGCCCCAAGTGCAAG AGCACCGTCTTGCTTGACTTCCTCCATGACAGCAGCAGCAACAACTGCAACATTAGAGCTAAGAAATGA
AA sequence Show only first row Show all	>Lus10016982 pacid=23172950 polypeptide=Lus10016982 locus=Lus10016982.g ID=Lus10016982.BGIv1.0 annot-version=v1.0 MSRRNNSNNPKLELKLNLSPPRGGNNNNFMRVDSPSRSATVSPTSPPSSCVSSEMNQDDSSGGLRYSNSPEATSMVLVGCPRCLMYVMLSEDDPRCPKCK STVLLDFLHDSSSNNCNIRAKK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06270			unknown protein		Lus10016982 [exp]	0	1
AT5G06270			unknown protein		Lus10021305 [exp]	1.0	0.8586
AT5G55490		GEX1, ATGEX1	gamete expressed protein 1 (.1...		Lus10042450 [exp]	10.4	0.7154
AT1G28270		RALFL4	ralf-like 4 (.1)		Lus10015316 [exp]	15.2	0.8153
AT3G54880			unknown protein		Lus10038690 [exp]	25.1	0.6700
AT5G54980			Uncharacterised protein family...		Lus10021788 [exp]	36.7	0.6736
AT3G22104			Phototropic-responsive NPH3 fa...		Lus10039710 [exp]	36.7	0.6565
					Lus10031606 [exp]	43.0	0.7497
AT5G01090			Concanavalin A-like lectin fam...		Lus10027751 [exp]	44.7	0.6821
AT5G46230			Protein of unknown function, D...		Lus10000616 [exp]	50.0	0.7258
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10040149 [exp]	103.0	0.6465

Compare expression of checked genes

Lus10016982 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.