Plant FIBer expression Database

Lus10016983 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G22280 76 / 6e-19 unknown protein
AT5G06265 69 / 2e-16 hyaluronan mediated motility receptor-related (.1.2.3)
AT3G44280 56 / 3e-11 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10043403
[exp]
79 / 3e-20 AT5G22280 127 / 3e-39 unknown protein
Lus10034182
[exp]
38 / 7e-05 AT5G22280 77 / 2e-20 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G206100
[exp]
93 / 8e-26 AT5G22280 72 / 2e-17 unknown protein
Potri.016G073500
[exp]
92 / 9e-26 AT5G22280 93 / 7e-26 unknown protein
Potri.004G200200
[exp]
72 / 1e-17 AT5G22280 101 / 3e-29 unknown protein
PFAM info
Representative CDS sequence
>Lus10016983 pacid=23173030 polypeptide=Lus10016983 locus=Lus10016983.g ID=Lus10016983.BGIv1.0 annot-version=v1.0
ATGCCGAGGCCGTGGGTTGTGGTGTTCCTGTTCCTGTTGATTGTATCAACGTCGCAGTTGGAGTGGACGCAGCTACTCGGCAACGAAATTGAAGCCAAAT
CAGAGGAGACCGTCAAGGAAGATTGGAAATCTAAAGCAAGGGAAGCTGTCAAAGAAAAGATTATCCTTTCCCAGGAGAAGAATATTCAGGCGTTGAACGA
GCTTGTACAGAATCTCCGAGAACAGTTGTCACAGTGCAAGAGTCTGAATGTTGCTGCAAATGATACATCGATTGATTTGCCTGAGCAATTGAATCAGCAT
GAACAGGAATCAATATCTGTCGAGTAG
AA sequence
>Lus10016983 pacid=23173030 polypeptide=Lus10016983 locus=Lus10016983.g ID=Lus10016983.BGIv1.0 annot-version=v1.0
MPRPWVVVFLFLLIVSTSQLEWTQLLGNEIEAKSEETVKEDWKSKAREAVKEKIILSQEKNIQALNELVQNLREQLSQCKSLNVAANDTSIDLPEQLNQH
EQESISVE

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G22280 unknown protein Lus10016983
[exp]
0 1
AT5G42620 metalloendopeptidases;zinc ion... Lus10010792
[exp]
4.0 0.7831
AT4G34960 Cyclophilin-like peptidyl-prol... Lus10025052
[exp]
14.1 0.7981
AT2G45690 PEX16, SSE1, AT... SHRUNKEN SEED 1, ARABIDOPSIS P... Lus10041379
[exp]
14.7 0.7961
AT5G27830 unknown protein Lus10020660
[exp]
16.9 0.8117
AT1G60430 ARPC3 actin-related protein C3 (.1.2... Lus10006335
[exp]
24.1 0.7895
AT5G58030 Transport protein particle (TR... Lus10036292
[exp]
27.8 0.7467
AT3G12770 MEF22 mitochondrial editing factor ... Lus10024876
[exp]
31.4 0.7735
AT4G10550 Subtilase family protein (.1.2... Lus10035478
[exp]
34.7 0.7723
AT2G44680 CKB4 casein kinase II beta subunit... Lus10042861
[exp]
40.8 0.7431
AT1G71790 Subunits of heterodimeric acti... Lus10003086
[exp]
43.5 0.7882

Lus10016983 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.