Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06260 439 / 8e-153 TLD-domain containing nucleolar protein (.1) AT4G34070 228 / 1e-71 Calcium-binding EF-hand family protein (.1) AT2G45380 109 / 9e-26 unknown protein AT2G44850 57 / 2e-08 unknown protein AT4G39870 52 / 5e-07 TLD-domain containing nucleolar protein (.1.2) AT2G05590 49 / 3e-06 TLD-domain containing nucleolar protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021306 [exp] 639 / 0 AT5G06260 574 / 0.0 TLD-domain containing nucleolar protein (.1) Lus10041697 [exp] 58 / 6e-09 AT4G39870 419 / 4e-146 TLD-domain containing nucleolar protein (.1.2) Lus10024053 [exp] 57 / 2e-08 AT4G39870 416 / 2e-137 TLD-domain containing nucleolar protein (.1.2) Lus10014476 [exp] 50 / 3e-06 AT2G05590 307 / 4e-104 TLD-domain containing nucleolar protein (.1.2) Lus10023727 [exp] 43 / 0.0006 AT1G04500 315 / 3e-100 CCT motif family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G206200 [exp] 511 / 0 AT5G06260 604 / 0.0 TLD-domain containing nucleolar protein (.1) Potri.005G075800 [exp] 68 / 2e-12 AT4G39870 405 / 1e-140 TLD-domain containing nucleolar protein (.1.2) Potri.007G092700 [exp] 62 / 2e-10 AT4G39870 414 / 3e-144 TLD-domain containing nucleolar protein (.1.2) Potri.010G065900 [exp] 46 / 3e-05 AT2G05590 286 / 6e-96 TLD-domain containing nucleolar protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07534 [flax] [poplar] TLD TLD
Representative CDS sequence Show only first row Show all	>Lus10016984 pacid=23172955 polypeptide=Lus10016984 locus=Lus10016984.g ID=Lus10016984.BGIv1.0 annot-version=v1.0 ATGGGCAACTCTCAATCAGCTTCGGCTTCTGATCCTCGCCACACTTCAGCCACCAGAGCTTTTTCCTCTACTGAATTGGACGACCTCAAATCGTTGTTCG CTTCTCTGGCAGCGAAATCTGGAAGCAACGGCGGTCACATCTCCCTTACTGTTTTCCAGGAATATTTCGGGTTGAAGGGTTCTCTAGGTCAGAGGCTGTT TGATTTGATTTCCCAGCAATGGAAAGATGGCAGCATTAAGTTTGAAGACCTTATTATTGCCAAGAATCAGTGCTTTGATGCTGAAATGAGAATCTCTGTG GTGCAGAGTGTTTACGAGAAGGGGAGCAAAGATGAAAATGAAGAGTTTATCTATCAGTTACTTGATGTCAATGGAGATGGTGCTGTGGACAGGAGAGTTT CTCTAATGTCATCCATTGCTTTTGCTGCTACCTCGATGAATCTGTTCTGGTTGCGGTTCTGGCGAGTATTTGGTACAGAAGCTTCTAAGACTATCAATGT CTTTCTTGATGCTGCAACTTTTTCGAAGGGTAGGAATGGGCCTGCTGAAAAGGGCATGTCCCTTACCGATTTTCGAAGTTGGTCTGCTCTCGTTCCATCG GTCAGGAAGTTCCTGGGAAGCTTAATGATACCACCTGATGCAGGAAGGCTTGGTACGCACGTTCCTCAATTGGTTCACGGAGAAGAAGTTAATTCGAATA TGATCTTGTTGAGGAAAGAATATGCTTGGCACATAGGAGGAGCGCTTCCGCTGCTTCCGCTGCACGAGCTGGAAGAGTGGAAACTCCTGTACCATAGCGC GGTGAATGGTTCTTGTCTCCTGTACCATAGCGCGGTGAATGAAAGAAAGATTCACCCTTTGTACTTATTTGCTGGAAGCTACAGGAGTGGCGAGGGACCA ACTGTTCTAGCTATTCAGGATAAAGATGGGTACATCTATGGAGGATATGCATCTCAACCATGGGAGAGGCAGGGCAACTTCTATTGGGACATGAAGTCAT TCCTCTTTCAGCTTCATCCAAAGGCCTCGCTTTTCAAACCCACTGGAGCTAACACTAATGTTCAATGGTGTGCAGTGAACTTTAGCCCAGAGAGCATACC GAATGGGATTGGTTTTGGAGGACGAGTGAATCACTTTGGTTTGTTCTTATCAGCAAGCTTCGATTCAGGGCATACCTTCAACTGCACCACATTCGGCAGC CCTTGCCTTTTGAAGACCAGCAGGATAATCCCAGAAGTCATAGAATGCTGGGGAGTTGTTCAGGGTCGAGGAGAGCAGGAAAAGAACTGA
AA sequence Show only first row Show all	>Lus10016984 pacid=23172955 polypeptide=Lus10016984 locus=Lus10016984.g ID=Lus10016984.BGIv1.0 annot-version=v1.0 MGNSQSASASDPRHTSATRAFSSTELDDLKSLFASLAAKSGSNGGHISLTVFQEYFGLKGSLGQRLFDLISQQWKDGSIKFEDLIIAKNQCFDAEMRISV VQSVYEKGSKDENEEFIYQLLDVNGDGAVDRRVSLMSSIAFAATSMNLFWLRFWRVFGTEASKTINVFLDAATFSKGRNGPAEKGMSLTDFRSWSALVPS VRKFLGSLMIPPDAGRLGTHVPQLVHGEEVNSNMILLRKEYAWHIGGALPLLPLHELEEWKLLYHSAVNGSCLLYHSAVNERKIHPLYLFAGSYRSGEGP TVLAIQDKDGYIYGGYASQPWERQGNFYWDMKSFLFQLHPKASLFKPTGANTNVQWCAVNFSPESIPNGIGFGGRVNHFGLFLSASFDSGHTFNCTTFGS PCLLKTSRIIPEVIECWGVVQGRGEQEKN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06260			TLD-domain containing nucleola...		Lus10016984 [exp]	0	1
AT3G51880		AtHMGB1, NFD1, ...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10035511 [exp]	14.4	0.8807
AT5G43210			Excinuclease ABC, C subunit, N...		Lus10016370 [exp]	23.2	0.8423
AT2G35060		KUP11	K+ uptake permease 11, K+ upta...		Lus10036222 [exp]	26.1	0.8414
AT3G10150		ATPAP16, PAP16	purple acid phosphatase 16 (.1...		Lus10042026 [exp]	32.6	0.8522
AT1G15030			Protein of unknown function (D...		Lus10033747 [exp]	36.3	0.8418
AT4G26310			elongation factor P (EF-P) fam...		Lus10007884 [exp]	38.2	0.8485
AT2G47010			unknown protein		Lus10000888 [exp]	38.5	0.8472
AT5G08560			transducin family protein / WD...		Lus10001411 [exp]	45.8	0.8478
AT5G35180			Protein of unknown function (D...		Lus10019585 [exp]	46.4	0.8355
AT5G66040		STR16	sulfurtransferase protein 16 (...		Lus10012566 [exp]	47.5	0.8473

Compare expression of checked genes

Lus10016984 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.