Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22320 127 / 4e-36 unknown protein AT5G55210 89 / 2e-22 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021308 [exp] 380 / 4e-136 AT4G22320 131 / 8e-38 unknown protein Lus10032566 [exp] 97 / 8e-25 AT4G22320 106 / 3e-28 unknown protein Lus10043179 [exp] 69 / 8e-15 AT4G22320 86 / 7e-21 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G001500 [exp] 142 / 2e-42 AT4G22320 102 / 9e-27 unknown protein Potri.011G023200 [exp] 127 / 2e-36 AT4G22320 108 / 6e-29 unknown protein Potri.001G356400 [exp] 76 / 3e-17 AT5G55210 48 / 6e-07 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016987 pacid=23172940 polypeptide=Lus10016987 locus=Lus10016987.g ID=Lus10016987.BGIv1.0 annot-version=v1.0 ATGGAGGGAGTAGGAGCTCGATTGGGACGTTCGTCGACTCGATACGGACCGACCACGGTATTCACGGGGTCGGTGCGTAGGTGGAAGAAGCGATGGGTTC ACGTTGCTCCGTCGCCAAACGGCGCGGCTAACTCTAACCACGGCGGTGGTCGGTTTCGTGCCAATGGCAACGCCGACGAGGGTAGCGACGCAGTAGCTGC TTCTACGTCCTCTACCGGTAATCAATCTAGTTCGCATCTCTTCCTTTACAAGTGGACTCCATTAACCCAATCCAATAACAGCAACAAGGACGACAACGCC GTCATTGACACCGCTAAGGACGATACGTCTGAGGAGGAGCGCCCAAAGCGCAAATGCAAATACATCCCGGTGGCTTTGCTAGAGCAACAGAAAATAGAGG ATACTGAAGAAAACAATGATGATGAAGTGAAGCCAAGTGATGGTGAAGAAATAGCAGAGGACCCGGCTTCTACACCTAATGGGCTTGATGAAAACCCTGA TGCTGTACCAATGGAAGAAAGTCAGGATGATGGACAACAAGGGGTACGGCAAGACCTGAACGAGAGCTTGGATTTGAATTCACAAGACCATGAAGATTCT GAATCAAAACCCGAGGAAGCCTCGTGA
AA sequence Show only first row Show all	>Lus10016987 pacid=23172940 polypeptide=Lus10016987 locus=Lus10016987.g ID=Lus10016987.BGIv1.0 annot-version=v1.0 MEGVGARLGRSSTRYGPTTVFTGSVRRWKKRWVHVAPSPNGAANSNHGGGRFRANGNADEGSDAVAASTSSTGNQSSSHLFLYKWTPLTQSNNSNKDDNA VIDTAKDDTSEEERPKRKCKYIPVALLEQQKIEDTEENNDDEVKPSDGEEIAEDPASTPNGLDENPDAVPMEESQDDGQQGVRQDLNESLDLNSQDHEDS ESKPEEAS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22320			unknown protein		Lus10016987 [exp]	0	1
AT4G22320			unknown protein		Lus10021308 [exp]	2.8	0.8051
AT1G78300		14-3-3OMEGA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10036481 [exp]	6.0	0.7813
AT5G14360			Ubiquitin-like superfamily pro...		Lus10014884 [exp]	11.2	0.8003
AT2G36830		TIP1;1, GAMMA-T...	TONOPLAST INTRINSIC PROTEIN 1;...		Lus10021510 [exp]	11.8	0.7775
AT3G59920		ATGDI2	RAB GDP dissociation inhibitor...		Lus10008341 [exp]	43.4	0.7134
AT3G59920		ATGDI2	RAB GDP dissociation inhibitor...		Lus10027094 [exp]	48.9	0.7290
AT1G03220			Eukaryotic aspartyl protease f...		Lus10021938 [exp]	52.5	0.7474
AT2G42760			unknown protein		Lus10005429 [exp]	53.3	0.7513
AT3G10760	GARP		Homeodomain-like superfamily p...		Lus10038996 [exp]	61.5	0.6851
AT1G79910			Regulator of Vps4 activity in ...		Lus10011455 [exp]	63.5	0.7345

Compare expression of checked genes

Lus10016987 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.