Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15040 79 / 9e-18 Protein of unknown function, DUF584 (.1) AT4G04630 68 / 3e-14 Protein of unknown function, DUF584 (.1) AT3G45210 62 / 3e-12 Protein of unknown function, DUF584 (.1) AT4G21970 62 / 5e-12 Protein of unknown function, DUF584 (.1) AT5G60680 61 / 1e-11 Protein of unknown function, DUF584 (.1) AT1G11700 58 / 3e-10 Protein of unknown function, DUF584 (.1) AT4G21930 57 / 3e-10 Protein of unknown function, DUF584 (.1) AT5G03230 53 / 1e-08 Protein of unknown function, DUF584 (.1) AT1G61930 53 / 2e-08 Protein of unknown function, DUF584 (.1) AT4G26950 51 / 3e-08 Protein of unknown function, DUF584 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021309 [exp] 309 / 5e-108 AT3G15040 99 / 2e-25 Protein of unknown function, DUF584 (.1) Lus10004207 [exp] 149 / 4e-45 AT3G15040 110 / 1e-29 Protein of unknown function, DUF584 (.1) Lus10029411 [exp] 149 / 8e-45 AT3G15040 112 / 3e-30 Protein of unknown function, DUF584 (.1) Lus10034190 [exp] 73 / 1e-15 AT3G15040 125 / 9e-36 Protein of unknown function, DUF584 (.1) Lus10019936 [exp] 61 / 2e-11 AT5G03230 99 / 1e-26 Protein of unknown function, DUF584 (.1) Lus10021474 [exp] 61 / 2e-11 AT5G60680 138 / 6e-42 Protein of unknown function, DUF584 (.1) Lus10006775 [exp] 59 / 2e-11 AT1G61930 110 / 4e-32 Protein of unknown function, DUF584 (.1) Lus10000724 [exp] 60 / 3e-11 AT3G45210 111 / 1e-31 Protein of unknown function, DUF584 (.1) Lus10002073 [exp] 61 / 5e-11 AT1G61930 156 / 5e-48 Protein of unknown function, DUF584 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G076300 [exp] 134 / 5e-39 AT3G15040 90 / 9e-22 Protein of unknown function, DUF584 (.1) Potri.006G209500 [exp] 93 / 1e-22 AT3G15040 65 / 3e-12 Protein of unknown function, DUF584 (.1) Potri.016G089900 [exp] 62 / 7e-12 AT5G03230 115 / 6e-33 Protein of unknown function, DUF584 (.1) Potri.006G127900 [exp] 60 / 3e-11 AT5G03230 122 / 1e-35 Protein of unknown function, DUF584 (.1) Potri.011G004100 [exp] 59 / 1e-10 AT4G04630 125 / 1e-36 Protein of unknown function, DUF584 (.1) Potri.011G003300 [exp] 59 / 1e-10 AT1G11700 161 / 6e-50 Protein of unknown function, DUF584 (.1) Potri.009G014100 [exp] 59 / 1e-10 AT3G45210 124 / 2e-36 Protein of unknown function, DUF584 (.1) Potri.004G014000 [exp] 58 / 2e-10 AT4G04630 124 / 4e-36 Protein of unknown function, DUF584 (.1) Potri.004G015700 [exp] 58 / 3e-10 AT1G11700 151 / 5e-46 Protein of unknown function, DUF584 (.1) Potri.004G211100 [exp] 57 / 4e-10 AT5G60680 120 / 1e-34 Protein of unknown function, DUF584 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04520 [flax] [poplar] Senescence_reg Senescence regulator
Representative CDS sequence Show only first row Show all	>Lus10016988 pacid=23173009 polypeptide=Lus10016988 locus=Lus10016988.g ID=Lus10016988.BGIv1.0 annot-version=v1.0 ATGGACTCCGGCCGCCGACTTCTCGGCTCCCTCCTCTCATTTCTCGGCTCGATCTCTCCATCGAGAGTCGGGGAAGCACCAGCAGCAGGGCTTGGCCACG AGTTGAACGAGGACGAGATTCTCTGGACCGACGACGATTTCAACGCAGGTCAGCGTCATCGTCTCCCTCCTCCGCCGAAGCAACAGCGCCACAGACGCAG CGTGTCGTTCCACCACACAAACTCCGGGATCCTAGCTGCTCTCCCGGAGATCAACCGCCGCCTGCCCGTGCTTTCCCGCCAGCCGTCCATCTCCTCGCCG GTAAAAGCCCTTCCGAGGACTGTCCCGGGCGAGCGAGACAACATGTGCACTCAGTCGATGCCGGCGTCTAGGAAATTGAGGCAGCAATCTGCTCCTATGA AAGTGCCGATGATGTCGATCGCCATGGCTAAGCAGAGGAACAGCAGGTACAAGGACGATTACGAGTACGGCAGCGGAGGAGGTGGTGGAGATGAGGAGAT GATGATGCTGCCGCCTCACGAGATCGTGGCCAGAGGGTGCAGGCAGTCGTCTGGTTCGATGCTGGAAGGAGTTGGACGGACACTCAAGGGAAGGGATCTG AGGCAGGTCAGAAACGCCGTGTTCCACCAAACAGGCTTTCTCGACTGA
AA sequence Show only first row Show all	>Lus10016988 pacid=23173009 polypeptide=Lus10016988 locus=Lus10016988.g ID=Lus10016988.BGIv1.0 annot-version=v1.0 MDSGRRLLGSLLSFLGSISPSRVGEAPAAGLGHELNEDEILWTDDDFNAGQRHRLPPPPKQQRHRRSVSFHHTNSGILAALPEINRRLPVLSRQPSISSP VKALPRTVPGERDNMCTQSMPASRKLRQQSAPMKVPMMSIAMAKQRNSRYKDDYEYGSGGGGGDEEMMMLPPHEIVARGCRQSSGSMLEGVGRTLKGRDL RQVRNAVFHQTGFLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15040			Protein of unknown function, D...		Lus10016988 [exp]	0	1
AT3G15040			Protein of unknown function, D...		Lus10021309 [exp]	1.0	0.9287
AT5G39760	ZF_HD	ATHB23, ZHD10	ZINC FINGER HOMEODOMAIN 10, ho...		Lus10005244 [exp]	4.5	0.8589
AT4G38660			Pathogenesis-related thaumatin...		Lus10025055 [exp]	5.7	0.8483
AT2G25270			unknown protein		Lus10001945 [exp]	9.2	0.8713
AT5G38110		SGA1, SGA01, AS...	anti- silencing function 1b (....		Lus10033579 [exp]	9.7	0.8354
AT5G39760	ZF_HD	ATHB23, ZHD10	ZINC FINGER HOMEODOMAIN 10, ho...		Lus10005242 [exp]	13.0	0.8392
AT3G51670			SEC14 cytosolic factor family ...		Lus10001269 [exp]	13.2	0.8529
AT2G44830			Protein kinase superfamily pro...		Lus10042911 [exp]	14.5	0.8441
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10016032 [exp]	15.4	0.8370
AT5G07700	MYB	ATMYB76	myb domain protein 76 (.1)		Lus10019085 [exp]	15.4	0.8112

Compare expression of checked genes

Lus10016988 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.