Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26510 738 / 0 UKL4 uridine kinase-like 4 (.1.2) AT1G55810 735 / 0 UKL3 uridine kinase-like 3 (.1.2.3) AT5G40870 637 / 0 UKL1, ATUK/UPRT1 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) AT3G27190 633 / 0 UKL2 uridine kinase-like 2 (.1) AT3G27440 608 / 0 UKL5 uridine kinase-like 5 (.1) AT5G43400 103 / 6e-23 Uncharacterised conserved protein UCP015417, vWA (.1) AT5G43390 100 / 7e-22 Uncharacterised conserved protein UCP015417, vWA (.1) AT5G13210 91 / 7e-19 Uncharacterised conserved protein UCP015417, vWA (.1) AT1G26190 85 / 6e-17 Phosphoribulokinase / Uridine kinase family (.1) AT1G32060 81 / 5e-16 PRK phosphoribulokinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021310 [exp] 887 / 0 AT4G26510 753 / 0.0 uridine kinase-like 4 (.1.2) Lus10041569 [exp] 638 / 0 AT5G40870 853 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Lus10035216 [exp] 634 / 0 AT5G40870 850 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Lus10032051 [exp] 524 / 1e-180 AT5G40870 698 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Lus10022289 [exp] 510 / 1e-178 AT3G27440 625 / 0.0 uridine kinase-like 5 (.1) Lus10013399 [exp] 137 / 9e-37 AT5G43400 261 / 2e-83 Uncharacterised conserved protein UCP015417, vWA (.1) Lus10041147 [exp] 132 / 5e-32 AT5G43400 823 / 0.0 Uncharacterised conserved protein UCP015417, vWA (.1) Lus10021875 [exp] 125 / 7e-30 AT5G43390 803 / 0.0 Uncharacterised conserved protein UCP015417, vWA (.1) Lus10000674 [exp] 81 / 7e-16 AT1G32060 667 / 0.0 phosphoribulokinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G165100 [exp] 782 / 0 AT4G26510 818 / 0.0 uridine kinase-like 4 (.1.2) Potri.001G467800 [exp] 778 / 0 AT1G55810 809 / 0.0 uridine kinase-like 3 (.1.2.3) Potri.017G069600 [exp] 654 / 0 AT5G40870 852 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Potri.001G332100 [exp] 644 / 0 AT5G40870 820 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Potri.017G071200 [exp] 602 / 0 AT3G27440 707 / 0.0 uridine kinase-like 5 (.1) Potri.003G165200 [exp] 98 / 4e-21 AT5G13210 851 / 0.0 Uncharacterised conserved protein UCP015417, vWA (.1) Potri.001G134000 [exp] 80 / 1e-15 AT1G32060 699 / 0.0 phosphoribulokinase (.1) Potri.003G099400 [exp] 79 / 2e-15 AT1G32060 690 / 0.0 phosphoribulokinase (.1) Potri.008G110500 [exp] 78 / 8e-15 AT1G26190 933 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Potri.010G134400 [exp] 77 / 2e-14 AT1G26190 968 / 0.0 Phosphoribulokinase / Uridine kinase family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11443 [flax] [poplar] DUF2828 Domain of unknown function (DUF2828) CL0023 [flax] [poplar] P-loop_NTPase PF00485 [flax] [poplar] PRK Phosphoribulokinase / Uridine kinase family
Representative CDS sequence Show only first row Show all	>Lus10016989 pacid=23172979 polypeptide=Lus10016989 locus=Lus10016989.g ID=Lus10016989.BGIv1.0 annot-version=v1.0 ATGGAATTCCACCAAGCATCAACATTCAGCTACAGAGTCGGATACAGAGTTGGATACAACAGACAAGTGGAGGGCAGGGAAAGAAAGTGGGAAACAGATT ATGAGGCGATACAGAGGAAGTTTGGGGAGAAAGGGTATAACAAGGTTCCAGAGGTAGTGTTCTGGAATCTGAGGGATTCGAAAGCTACACTAGTAGCTGG AACTCAGAATGGGGTGTCGCTGGTAAGTGGATTTTCGAAGAATTTGCTGACAATGTATATCGATGGAGGTGGGAATTGTATGGGATCGAAATCAGTGGTG GATATGATAGAGGCATCCTCAGGTGTGCATTTTTCTGGCTTTCACATGGACGGCTCAGCCTCGGGGCCTAGAACTAATGGACATCCAACCACCTCTGCCA GTGATGACATTTACAAACAACCTTTTGTTATTGGAGTTGCTGGAGGAGCAGCTTCAGGGAAAACTACAGTGTGCGACATGATCATTCAGCAGCTTCATGA TCAGCGTGTAGTTCTTGTTAATCAGGACTCCTTTTATTTCAATCTTTCTGAAGAAGAACTTAAACGGGTCCATGAATACAACTTTGACCATCCTGATGCA TTTGACAACGATCAGCTGTTATCTGTCATGGAGAAGCTGAGGCGGGGACAGGCTGTAGATATTCCTAAGTATGATTTCAAGAGTTACAAAAGTGACGCTA TCCCTCCAAGAAGGGTTAATCCGTCAGATGTCATAATTTTGGAAGGAATTCTCATTCTTCATGATCCTCGCATTCGGGACTTGATGAACATGAAGATATT TGTTGATATAGATGCTGATGTACGGTTGGCAAGGAGAATAAGGCGTGATACTGGCGAGAAAGGTAGAGATATTGCCACCGTTCTTGATCAGTACTCAAAA TTTGTGAAGCCTGCTTTTGATGACTTCATACTTCCAACCAAAAAGTATGCTGATATTATCATTCCCCGTGGAGGAGACAATCATGTTGCAATTGATTTGA TTGTGCAACATATTCGTACCAAACTTGGTCAACATGATCTGTGTAAAATTTACCCCAACTTATACGTCATTCAATCAACTTTTCAGGTGGTAGAGCACGG TCTTGGACACCTACCATTTACAGAGAAGCAGGTTCTTACGCCAACCGGTTCTGTTTATACTGGTGTGGATTTCTGCAAGAGATTGTGCGGGGTGTCCGTT GTGAGGAGTGGTGAGAGTATGGAAAATGCATTGCGAGCTTGTTGCAAAGGCATCAAAATAGGGAAGATTCTTATCCATAGGGAAGGGGACAATGGTCAGC ATCTAATCTACGAGAAGTTACCAAAAGACATTGCGGATAGGCATGTTTTACTACTGGATCCCATTTTAGGAACAGGCAATTCGGCAGTTCAAGCCATTTC TTTACTCGTCAGCAAGGGTGTGCCTGAGGCCAACATTATATTTCTTAATCTCATATCAGCACCTCAGGGAGTTCATGTAGTCTGCAAAAGATTCCCCAGG ATAAAGATTGTTACATCAGAGATTGAAACAGGTTTGAATGAAGATTTCCGTGTCATACCGGGAATGGGGGAGTTTGGAGACAGATATTTCGGCACAGACG ACGATGACCAGCCGGTGGTGTCGGTGGCCGGAACCCACAAAAACGCCAAACCAGCGGTCACGCGAAGCTACGCGGTACAAGCGCCGCGTTTTTTTNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGA TGA
AA sequence Show only first row Show all	>Lus10016989 pacid=23172979 polypeptide=Lus10016989 locus=Lus10016989.g ID=Lus10016989.BGIv1.0 annot-version=v1.0 MEFHQASTFSYRVGYRVGYNRQVEGRERKWETDYEAIQRKFGEKGYNKVPEVVFWNLRDSKATLVAGTQNGVSLVSGFSKNLLTMYIDGGGNCMGSKSVV DMIEASSGVHFSGFHMDGSASGPRTNGHPTTSASDDIYKQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYFNLSEEELKRVHEYNFDHPDA FDNDQLLSVMEKLRRGQAVDIPKYDFKSYKSDAIPPRRVNPSDVIILEGILILHDPRIRDLMNMKIFVDIDADVRLARRIRRDTGEKGRDIATVLDQYSK FVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIQSTFQVVEHGLGHLPFTEKQVLTPTGSVYTGVDFCKRLCGVSV VRSGESMENALRACCKGIKIGKILIHREGDNGQHLIYEKLPKDIADRHVLLLDPILGTGNSAVQAISLLVSKGVPEANIIFLNLISAPQGVHVVCKRFPR IKIVTSEIETGLNEDFRVIPGMGEFGDRYFGTDDDDQPVVSVAGTHKNAKPAVTRSYAVQAPRFFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26510		UKL4	uridine kinase-like 4 (.1.2)		Lus10016989 [exp]	0	1
AT1G05960			ARM repeat superfamily protein...		Lus10001161 [exp]	2.8	0.8436
AT3G51460		rhd4	ROOT HAIR DEFECTIVE4, Phosphoi...		Lus10035993 [exp]	4.0	0.8300
AT3G24840			Sec14p-like phosphatidylinosit...		Lus10011853 [exp]	4.6	0.8272
AT3G12770		MEF22	mitochondrial editing factor ...		Lus10000706 [exp]	7.7	0.7839
AT4G26700		ATFIM1	ARABIDOPSIS THALIANA FIMBRIN 1...		Lus10016580 [exp]	9.5	0.7959
AT1G58520		RXW8	lipases;hydrolases, acting on ...		Lus10004597 [exp]	11.8	0.7923
AT3G23340		CKL10	casein kinase I-like 10 (.1)		Lus10000553 [exp]	14.9	0.7806
AT1G79640			Protein kinase superfamily pro...		Lus10000416 [exp]	15.1	0.7924
AT2G38580			Mitochondrial ATP synthase D c...		Lus10021384 [exp]	15.6	0.7840
AT2G43240			Nucleotide-sugar transporter f...		Lus10027009 [exp]	17.7	0.8001

Compare expression of checked genes

Lus10016989 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.