Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43400 320 / 3e-106 Uncharacterised conserved protein UCP015417, vWA (.1) AT5G13210 309 / 7e-102 Uncharacterised conserved protein UCP015417, vWA (.1) AT5G43390 297 / 1e-97 Uncharacterised conserved protein UCP015417, vWA (.1) AT3G24780 297 / 6e-97 Uncharacterised conserved protein UCP015417, vWA (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021875 [exp] 397 / 4e-135 AT5G43390 803 / 0.0 Uncharacterised conserved protein UCP015417, vWA (.1) Lus10041147 [exp] 393 / 7e-134 AT5G43400 823 / 0.0 Uncharacterised conserved protein UCP015417, vWA (.1) Lus10013399 [exp] 105 / 2e-27 AT5G43400 261 / 2e-83 Uncharacterised conserved protein UCP015417, vWA (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G165200 [exp] 311 / 3e-103 AT5G13210 851 / 0.0 Uncharacterised conserved protein UCP015417, vWA (.1) Potri.009G091400 [exp] 160 / 7e-46 AT5G43400 339 / 3e-108 Uncharacterised conserved protein UCP015417, vWA (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11443 [flax] [poplar] DUF2828 Domain of unknown function (DUF2828)
Representative CDS sequence Show only first row Show all	>Lus10016990 pacid=23172998 polypeptide=Lus10016990 locus=Lus10016990.g ID=Lus10016990.BGIv1.0 annot-version=v1.0 ATGCCGCTTGCTCACCCGGTTACGAGTGATACGCAGTATGAAGAAGGCATGGAAGAGGCTCATTATGTTTATCGTGTACGAGACAGGCTTAGGAAGGAAA TTCTGGTCCCTATCCGTAAAGCTCTTGAGCTGCCTGAGGTGTATATGAGTGCGCGAAAATGGAATTCTCTTCCATATGGCAGAGCTCCATCTGTGGCAAT GAAGAACTACAAGGACCATTTAATCAAGCACGATAAGGAGAGGTTCGAGGAGTATCTAGAGAATGTGGCGACTGGGAAGGCCAAGATAGCAGCTGGGGCA TTACTTCCTCATGAGATAATCGGGCAGTTGGAAGATAAAGATGGAGGAACTGTAGCGGAGCTTCAATGGGCGAGGGTGGTAGAAGACATGTTAAAGAAGG GGAAGATGAGCAATTGCATTGCTGTTTGTGATGTGTCTGGTAGCATGAGTGGAACTCCAATGGAGGTGTGTGTGGCTCTTGGGATTTTGGTATCGGAGCT AAGTGAGGAGCCATGGAAAGGGAAAGTGATTACATTCAGTGAAGATCCAGAGATGCATCTGGTGGAGGAAAGCAGTCTGAAGGAGAAGACTGAGTTCATT AGGAGGATGAAATGGGGAATGAGCACTAATTTCTACAAGGTGTTCGATAAGATCTTGCAAATAACCTGA
AA sequence Show only first row Show all	>Lus10016990 pacid=23172998 polypeptide=Lus10016990 locus=Lus10016990.g ID=Lus10016990.BGIv1.0 annot-version=v1.0 MPLAHPVTSDTQYEEGMEEAHYVYRVRDRLRKEILVPIRKALELPEVYMSARKWNSLPYGRAPSVAMKNYKDHLIKHDKERFEEYLENVATGKAKIAAGA LLPHEIIGQLEDKDGGTVAELQWARVVEDMLKKGKMSNCIAVCDVSGSMSGTPMEVCVALGILVSELSEEPWKGKVITFSEDPEMHLVEESSLKEKTEFI RRMKWGMSTNFYKVFDKILQIT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43400			Uncharacterised conserved prot...		Lus10016990 [exp]	0	1
AT2G26695			Ran BP2/NZF zinc finger-like s...		Lus10033023 [exp]	5.1	0.7105
AT5G20140			SOUL heme-binding family prote...		Lus10040682 [exp]	7.7	0.6875
AT1G72200			RING/U-box superfamily protein...		Lus10041134 [exp]	10.7	0.6819
AT5G22290	NAC	FSQ6, FAN, ANAC...	fructose-sensing quantitative ...		Lus10005204 [exp]	15.4	0.6638
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10027030 [exp]	28.1	0.6778
AT5G14610			DEAD box RNA helicase family p...		Lus10035149 [exp]	32.2	0.6484
AT5G45360			F-box family protein (.1)		Lus10007767 [exp]	34.1	0.6652
AT4G32190			Myosin heavy chain-related pro...		Lus10001498 [exp]	37.5	0.5599
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Lus10004309 [exp]	38.1	0.6519
AT1G02030	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10009775 [exp]	41.7	0.5816

Compare expression of checked genes

Lus10016990 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.