Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06130 365 / 9e-127 chaperone protein dnaJ-related (.1.2) AT5G61670 329 / 5e-113 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022688 [exp] 411 / 4e-145 AT5G06130 388 / 4e-136 chaperone protein dnaJ-related (.1.2) Lus10021316 [exp] 374 / 1e-130 AT5G06130 348 / 3e-122 chaperone protein dnaJ-related (.1.2) Lus10016713 [exp] 322 / 1e-109 AT5G61670 447 / 2e-159 unknown protein Lus10014223 [exp] 294 / 7e-101 AT5G06130 295 / 1e-102 chaperone protein dnaJ-related (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G210500 [exp] 393 / 5e-138 AT5G06130 401 / 2e-141 chaperone protein dnaJ-related (.1.2) Potri.012G114200 [exp] 327 / 1e-111 AT5G61670 380 / 3e-133 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016993 pacid=23172936 polypeptide=Lus10016993 locus=Lus10016993.g ID=Lus10016993.BGIv1.0 annot-version=v1.0 ATGGTGACTTCGTGTCTCAACTCCACTCCTTATCTTCTTCTTCCTCGTTCTCCTTCGCCCCAGAATTCCTTATGTCTTCGTAGGATTTCCAACCGCTTCT CCTTCTCCTCCCGCCGCTCCTTCCGCTCTCCGATCGTCCGCTGCTCTTCCCCGCTGGACTCTTCCGACTCTGTCCCCGCCGGCGATAGTAATTGGAATAA CTTCTGTATTATAGAAGGACCGGAGACGGTTCAGGATTTCGTTCAGATGCAGACGCAGGACATCGAGGAGAATATCAGGAACAGGCGCAACAAGATCTTT CTTCTCATGGAGGAGTTGCGGAGATTGCGGATACAGCAGAGGATAAAAAGCGGGAAAAGAAGTATCAATGGAGCTGGTGAAGAAGAGGAGATGAGCAACG AGATGCCTGAAATTCCGTCCTCGATCCCCTTTCTTCCTCACGTGACGCCAAAGACACTAAAGCAGCTCTACCTTACAAGCTTCTCATTCGTAGCAGGGAT CATTATGTTTGGGGGACTTATTGCTCCTACTCTCGAAGTGAAACTGGGTATAGGGGGAACCTCCTACGAGGATTTTATTAGGAGCATGCATTTGCCACTG CAGTTAAGCCAGGTCGATCCTATTGTAGCATCTTTTTCAGGTGGAGCAGTGGGTGTCATCTCAGCTTTGATGCTGATTGAAGTTAACAATGTAGAGCAAC AAGAGAAGAAGAGGTGCAGATACTGCAATGGAACTGGATATTTGGCATGTGCTCGATGCGCTGGTGGTGGTGTCTGCTCGAGTGTTGACCCTATCTCATC ATCTAGTGTTTCAGATCAACCATCGCGTGTCCCCTCAACTCAAAGGTGTCTAAACTGCTCTGGTGCAGGAAAGGTGATGTGCCCTACATGTCTCTGCACT GGAATGGTGATGGCAAGTGAACACGATCCCCGAATCAATCCATTCGATTGA
AA sequence Show only first row Show all	>Lus10016993 pacid=23172936 polypeptide=Lus10016993 locus=Lus10016993.g ID=Lus10016993.BGIv1.0 annot-version=v1.0 MVTSCLNSTPYLLLPRSPSPQNSLCLRRISNRFSFSSRRSFRSPIVRCSSPLDSSDSVPAGDSNWNNFCIIEGPETVQDFVQMQTQDIEENIRNRRNKIF LLMEELRRLRIQQRIKSGKRSINGAGEEEEMSNEMPEIPSSIPFLPHVTPKTLKQLYLTSFSFVAGIIMFGGLIAPTLEVKLGIGGTSYEDFIRSMHLPL QLSQVDPIVASFSGGAVGVISALMLIEVNNVEQQEKKRCRYCNGTGYLACARCAGGGVCSSVDPISSSSVSDQPSRVPSTQRCLNCSGAGKVMCPTCLCT GMVMASEHDPRINPFD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06130			chaperone protein dnaJ-related...		Lus10016993 [exp]	0	1
AT4G32340			Tetratricopeptide repeat (TPR)...		Lus10002013 [exp]	4.5	0.7677
AT4G16700		PSD1	phosphatidylserine decarboxyla...		Lus10007807 [exp]	9.8	0.7710
AT4G31310			AIG2-like (avirulence induced ...		Lus10020179 [exp]	14.0	0.7767
					Lus10019560 [exp]	23.9	0.7399
					Lus10003899 [exp]	28.7	0.7525
AT3G22142			Bifunctional inhibitor/lipid-t...		Lus10033214 [exp]	42.4	0.7155
AT1G27070			5'-AMP-activated protein kinas...		Lus10030802 [exp]	43.5	0.6856
AT2G39140		PDE328, SVR1	SUPPRESSOR OF VARIEGATION 1, P...		Lus10037966 [exp]	44.0	0.7371
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10018595 [exp]	49.0	0.7165
AT3G46850			Subtilase family protein (.1)		Lus10016482 [exp]	49.6	0.7095

Compare expression of checked genes

Lus10016993 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.