Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06140 605 / 0 ATSNX1 ARABIDOPSIS THALIANA SORTING NEXIN 1, sorting nexin 1 (.1) AT5G07120 119 / 3e-29 SNX2b sorting nexin 2B (.1) AT5G58440 112 / 1e-26 SNX2a sorting nexin 2A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014225 [exp] 653 / 0 AT5G06140 645 / 0.0 ARABIDOPSIS THALIANA SORTING NEXIN 1, sorting nexin 1 (.1) Lus10021317 [exp] 598 / 0 AT5G06140 523 / 0.0 ARABIDOPSIS THALIANA SORTING NEXIN 1, sorting nexin 1 (.1) Lus10042247 [exp] 100 / 8e-23 AT5G07120 811 / 0.0 sorting nexin 2B (.1) Lus10026403 [exp] 100 / 1e-22 AT5G07120 753 / 0.0 sorting nexin 2B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G076400 [exp] 665 / 0 AT5G06140 664 / 0.0 ARABIDOPSIS THALIANA SORTING NEXIN 1, sorting nexin 1 (.1) Potri.006G209600 [exp] 639 / 0 AT5G06140 635 / 0.0 ARABIDOPSIS THALIANA SORTING NEXIN 1, sorting nexin 1 (.1) Potri.019G124200 [exp] 105 / 2e-24 AT5G07120 778 / 0.0 sorting nexin 2B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00787 [flax] [poplar] PX PX domain CL0145 [flax] [poplar] Golgi-transport PF09325 [flax] [poplar] Vps5 Vps5 C terminal like
Representative CDS sequence Show only first row Show all	>Lus10016994 pacid=23172989 polypeptide=Lus10016994 locus=Lus10016994.g ID=Lus10016994.BGIv1.0 annot-version=v1.0 ATGGACCAGCAGCAGTGGAGCTCCTCCGGCTACTCTAACAGCCCTCGGTCTCCCTCCTCGGAGCCCTACTTGTCTGTTTCTGTCACCGATCCCGTCAAGT TAGGCAATGGCGTTCAGGCTTACATCTCGTATCGAGTCATTACCAAGACGAATCTACCTGGCTACCAAGGTCCTGAAAAAATTGTCATCCGGCGCTATAG TGATTTTGTATGGTTACATGATCGGCTTTTCGAGAAGTACAAAGGAGTGTTCATTCCTCCTCTGCCAGAGAAGAGCGCTGTTGAAAAGTTCCGTTTTAGT GCGGAATTTATCGAGATGAGGCGTCAAGCATTGGATATATTTGTTAATAGGATAGCCTCACATCAGGAACTTCAGCCAAGTGAGGCTCTGAAAACCTTTT TGCAGGCAGATGAAGAGACAATGGAAAGACTAAGATCTCAGGAGTCTAGCTATTTCAAGAGCAAGCCAGGAGACTGGTTGCAAATCTTCAAGGACGTGCA ATCTAAGATGAGTGATGTTGTTCTTGGGAAAGAAAAACCTGTTGAAGAATCAAATCCCGAATATGAAAAGCTGAAGCATTACATCTTTGAGCTTGAAAAC CACTTAGCAGAGGCTCAGAAACATGCATATCGTCTCGTAAAGAGGCACAGAGAATTAGGACAATCTCTCTTGGATTTCGGTAAGGCAGCTAAGTTACTCG GTGCATGCGAAGCAGATGCCCTTGGAAAAGCATTTACCGAGCTGGGGGCAAAATCAGAGGCATTGTCAGTCCGGCTACAAAAAGAGGCCAATCAACTCCT AATGAATTTTGAAGAACCTATGAAAGATTATGTCCGTGCGGTGCAATCTATTAAGGCAACTATTGCTGAAAGAGCCAATGCCTTCAGGCATCAATGTGAA TTGGCTGAAACAATGAAGTTGAAGGAGCTAAATCTGAACAAGCTTATGCTGATGCGCTCTGACAGAGTAGGTGAAGCTGAAATTGAATACAAAGAGTTGG AAGCAGACAGCCAGGAAGCTGCAAGAACATTTGAGAGCATCGTCCGACTAATGAACGGAGAGATTGTCCGTTTCCAAGAACAGAAAGCCGTTGACATGGG AAAAGCATTCCACGAATTCGCGAAGGGGCAGGCACGCCTGGCGAATAGTATTGCGGATGCTTGGCGAAGCCTCCTCCCTAAGCTTGAAGCTTGTTCCGCC ACTTCTGTGTAG
AA sequence Show only first row Show all	>Lus10016994 pacid=23172989 polypeptide=Lus10016994 locus=Lus10016994.g ID=Lus10016994.BGIv1.0 annot-version=v1.0 MDQQQWSSSGYSNSPRSPSSEPYLSVSVTDPVKLGNGVQAYISYRVITKTNLPGYQGPEKIVIRRYSDFVWLHDRLFEKYKGVFIPPLPEKSAVEKFRFS AEFIEMRRQALDIFVNRIASHQELQPSEALKTFLQADEETMERLRSQESSYFKSKPGDWLQIFKDVQSKMSDVVLGKEKPVEESNPEYEKLKHYIFELEN HLAEAQKHAYRLVKRHRELGQSLLDFGKAAKLLGACEADALGKAFTELGAKSEALSVRLQKEANQLLMNFEEPMKDYVRAVQSIKATIAERANAFRHQCE LAETMKLKELNLNKLMLMRSDRVGEAEIEYKELEADSQEAARTFESIVRLMNGEIVRFQEQKAVDMGKAFHEFAKGQARLANSIADAWRSLLPKLEACSA TSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06140		ATSNX1	ARABIDOPSIS THALIANA SORTING N...		Lus10016994 [exp]	0	1
AT5G06560			Protein of unknown function, D...		Lus10012288 [exp]	6.2	0.8078
AT5G45360			F-box family protein (.1)		Lus10035689 [exp]	8.1	0.7870
AT1G12450			SNARE associated Golgi protein...		Lus10028900 [exp]	8.7	0.7894
AT5G64220	CAMTA		Calmodulin-binding transcripti...		Lus10036162 [exp]	9.3	0.8138
AT4G33630		EX1	EXECUTER1, Protein of unknown ...		Lus10020435 [exp]	10.4	0.7848
AT3G62220			Protein kinase superfamily pro...		Lus10004524 [exp]	11.6	0.7761
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10039472 [exp]	12.6	0.7763
AT1G25280	TUB	AtTLP10	tubby like protein 10 (.1.2.3)		Lus10043482 [exp]	14.1	0.7282
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10019655 [exp]	19.5	0.7880
AT1G10120	bHLH	bHLH074, CIB4	basic helix-loop-helix (bHLH) ...		Lus10012484 [exp]	20.6	0.7509

Compare expression of checked genes

Lus10016994 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.