Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02875 558 / 0 ILR1 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) AT5G56660 399 / 2e-136 ILL2 IAA-leucine resistant (ILR)-like 2 (.1) AT1G44350 396 / 1e-134 ILL6 IAA-leucine resistant (ILR)-like gene 6 (.1) AT1G51760 393 / 6e-134 JR3, IAR3 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) AT5G54140 388 / 4e-132 ILL3 IAA-leucine-resistant (ILR1)-like 3 (.1) AT1G51780 380 / 4e-129 ILL5 IAA-leucine resistant (ILR)-like gene 5 (.1) AT5G56650 376 / 3e-127 ILL1 IAA-leucine resistant (ILR)-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021321 [exp] 887 / 0 AT3G02875 573 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Lus10022761 [exp] 488 / 3e-171 AT3G02875 489 / 3e-172 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Lus10030659 [exp] 442 / 3e-153 AT1G51760 489 / 8e-172 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10030828 [exp] 439 / 4e-152 AT1G51760 489 / 6e-172 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10010715 [exp] 426 / 1e-146 AT1G51760 463 / 1e-161 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10037601 [exp] 415 / 2e-142 AT1G51760 649 / 0.0 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10032963 [exp] 410 / 8e-141 AT5G54140 545 / 0.0 IAA-leucine-resistant (ILR1)-like 3 (.1) Lus10029200 [exp] 409 / 5e-140 AT5G56660 469 / 8e-164 IAA-leucine resistant (ILR)-like 2 (.1) Lus10025668 [exp] 404 / 5e-138 AT1G44350 585 / 0.0 IAA-leucine resistant (ILR)-like gene 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G207400 [exp] 676 / 0 AT3G02875 584 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Potri.006G207300 [exp] 659 / 0 AT3G02875 568 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Potri.016G074100 [exp] 545 / 0 AT3G02875 508 / 1e-178 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Potri.010G035900 [exp] 435 / 4e-150 AT1G51760 482 / 1e-168 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Potri.002G082400 [exp] 432 / 8e-149 AT1G44350 609 / 0.0 IAA-leucine resistant (ILR)-like gene 6 (.1) Potri.005G178900 [exp] 432 / 2e-148 AT1G44350 604 / 0.0 IAA-leucine resistant (ILR)-like gene 6 (.1) Potri.012G007400 [exp] 412 / 2e-141 AT5G54140 548 / 0.0 IAA-leucine-resistant (ILR1)-like 3 (.1) Potri.003G045200 [exp] 411 / 4e-141 AT1G51760 680 / 0.0 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Potri.015G004000 [exp] 399 / 2e-136 AT5G54140 520 / 0.0 IAA-leucine-resistant (ILR1)-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07687 [flax] [poplar] M20_dimer Peptidase dimerisation domain CL0035 [flax] [poplar] Peptidase_MH PF01546 [flax] [poplar] Peptidase_M20 Peptidase family M20/M25/M40
Representative CDS sequence Show only first row Show all	>Lus10016998 pacid=23172958 polypeptide=Lus10016998 locus=Lus10016998.g ID=Lus10016998.BGIv1.0 annot-version=v1.0 ATGGAGTTCATCATCTACCGACCCACCAGCAGTTTCTTCTGCTTCCTAATAACACTTCTAGTGGTGGGTGGTCAATCTTCGGTCAACGGTCAAAAACACC AACTGGGGTTGGAGACCCTGGCTCAGGAGCTAATCGAATCTGCAAAGGAACCGGAGTTCTTCGAGTGGATGAGAGGGATCAGAAGGAGGATCCATCAGTA TCCCGAACTGGGTTTTGAGGAGCACAGAACCAGCCAGATCATCAGAGCTGAGCTTGATTCTCTTGGGATTCATTACAAATGGCCTGTTGCCCAAACTGGA GTGGTTGCTTCCATTGGAAATGGGGGCAATCCAGTTTTTGGCCTTAGAGCCGACATGGATGCCCTTCCTCTTCAGGAAAAAGTAGAGTGGGAGTATAAGA GCAAAATAGAGGGAAAGATGCATGCTTGTGGCCATGATTCTCATGTAGCAATGCTCCTTGGAGCTGCCAAGTTACTCCACGCCAAGAGAGACACACTTAA GGGAACGGTGAAGCTAGTTTTCCAGCCAGGAGAGGAGGGTTACGCTGGTGCTTACCATATGTTACAAGACGGCTGTCTTGATGATCTGAATGCCATCTTA AGCATACATGTTTTGCCTTCAGTGCCTACGGGCGCCATTGCTTCCAGACCTGGTCCCATACTTGCTGGCGTTGGGCTCTTCTCTGCAGCAATTCAGGGAG TTGGCGTCCATGCTTCATCTCCTCATTTGGGTAGAGACCCGATTCTAGCGGCATCAGCTTCAATCGTTGCTCTCCAACAGATTGTATCTCGTGAGACCGA TCCCCTTGAGGCTGCGGTGGTGACAGTAGGACTGATTGAAGGAGGCAAAGCAGGAAATGTAATTCCAGATACAGTGCGATTTGAAGGAACTTTCAGAAGT CTAAGCGCAAAGGGTGTATACTACCTTCAACAGAGAATCAAAGAGATCATTGAAATGCAGGCAGCAGTTCATAGGTGCAACGTAACGATGGACTTCATGG AGCACAGACATCTACCATACCCTCCCATGATCAACGATGATGGGGTATATAACCATGTTAAGAAGGTTGGAGAGATCTTACTTGGGGAGTCAAATGTGCA GACGTTTCCGGTCACCATGGGCGCAGAGGACTTCAGTTTCTTCTCTGAGAAGATGCCTGCTGCGATTTTTGTGATCGGAGTAAAGAACGAGACTCTGAAC TCGGATCAACCGCTTCACTCGCCTTACTTCTTCATCGATGAGGAGTCGTTTCCGGTAGGTGCAGCTCTTAATGCTGCTGCTGCAATCTCATACTTGGACA GCCACCACGCCATTGTTGAGTGCGACCAACCAGACTTGCTTTCAGGTTTTGAAACGAAAATCATTTAA
AA sequence Show only first row Show all	>Lus10016998 pacid=23172958 polypeptide=Lus10016998 locus=Lus10016998.g ID=Lus10016998.BGIv1.0 annot-version=v1.0 MEFIIYRPTSSFFCFLITLLVVGGQSSVNGQKHQLGLETLAQELIESAKEPEFFEWMRGIRRRIHQYPELGFEEHRTSQIIRAELDSLGIHYKWPVAQTG VVASIGNGGNPVFGLRADMDALPLQEKVEWEYKSKIEGKMHACGHDSHVAMLLGAAKLLHAKRDTLKGTVKLVFQPGEEGYAGAYHMLQDGCLDDLNAIL SIHVLPSVPTGAIASRPGPILAGVGLFSAAIQGVGVHASSPHLGRDPILAASASIVALQQIVSRETDPLEAAVVTVGLIEGGKAGNVIPDTVRFEGTFRS LSAKGVYYLQQRIKEIIEMQAAVHRCNVTMDFMEHRHLPYPPMINDDGVYNHVKKVGEILLGESNVQTFPVTMGAEDFSFFSEKMPAAIFVIGVKNETLN SDQPLHSPYFFIDEESFPVGAALNAAAAISYLDSHHAIVECDQPDLLSGFETKII

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02875		ILR1	IAA-LEUCINE RESISTANT 1, Pepti...		Lus10016998 [exp]	0	1
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Lus10037268 [exp]	2.0	0.9542
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10013218 [exp]	2.0	0.9533
AT5G67250		VFB4, SKIP2	VIER F-BOX PROTEINE 4, SKP1/AS...		Lus10019319 [exp]	4.5	0.9319
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Lus10030810 [exp]	5.7	0.9459
AT1G27900			RNA helicase family protein (....		Lus10015812 [exp]	6.6	0.9228
AT4G36740	HD	HB-5, ATHB40	homeobox protein 40 (.1)		Lus10041719 [exp]	7.5	0.9363
AT3G02875		ILR1	IAA-LEUCINE RESISTANT 1, Pepti...		Lus10021321 [exp]	7.9	0.9378
AT3G06810		IBR3	IBA-RESPONSE 3, acyl-CoA dehyd...		Lus10020908 [exp]	8.4	0.9441
AT1G23440			Peptidase C15, pyroglutamyl pe...		Lus10013026 [exp]	8.5	0.9467
AT2G45500			AAA-type ATPase family protein...		Lus10009233 [exp]	9.0	0.9361

Compare expression of checked genes

Lus10016998 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.