Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22300 69 / 5e-14 AtNIT4, NIT4 nitrilase 4 (.1) AT3G44310 67 / 1e-13 NITI, NIT1, ATNIT1 A. THALIANA NITRILASE 1, nitrilase 1 (.1.2.3) AT3G44320 67 / 4e-13 AtNIT3, NIT3 nitrilase 3 (.1) AT3G44300 65 / 2e-12 AtNIT2, NIT2 nitrilase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021322 [exp] 231 / 3e-74 AT5G22300 265 / 7e-85 nitrilase 4 (.1) Lus10005201 [exp] 74 / 8e-16 AT5G22300 559 / 0.0 nitrilase 4 (.1) Lus10013313 [exp] 72 / 4e-15 AT5G22300 561 / 0.0 nitrilase 4 (.1) Lus10018449 [exp] 70 / 4e-14 AT5G22300 281 / 6e-92 nitrilase 4 (.1) Lus10011234 [exp] 69 / 6e-14 AT5G22300 274 / 3e-89 nitrilase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G074200 [exp] 99 / 3e-24 AT5G22300 358 / 1e-121 nitrilase 4 (.1) Potri.006G207700 [exp] 95 / 4e-23 AT5G22300 369 / 2e-126 nitrilase 4 (.1) Potri.004G199600 [exp] 68 / 2e-13 AT5G22300 578 / 0.0 nitrilase 4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016999 pacid=23173027 polypeptide=Lus10016999 locus=Lus10016999.g ID=Lus10016999.BGIv1.0 annot-version=v1.0 ATGGACGTAGTGGAGAGATTTGAGAATTTCCTTTTCAGTACAGTGGTGTTCTTAGATCCCGTAGGAAGGATTCTGGGTCGGCAAAGGAAGTTGATCCCAC TGCCATCAGAATCTGGAATATGGTGTTCTGGTGGCAAATCATCGTCGCTTCCATTGTTTCAAACCCTTTTCAGGAGTGTCGGCGGACTAATCTCTTGGGA CAGCAAGTTGCCATTCTTAAGAAATGAACTCTATGCTAAGTTCAGGCAAAGGAATGATTACCCGCTAGCAGATGGAGATGGAAATGGCAATGCAAGTGCA AGCATATCATCTGGAGGTAATTTCATTGCATCCCCATCAGGGAAATTCTTGTCAGAGCCTAATCACGAAGGAGAGTGCCTCATCTCAGCTGATCTTGGTA ACGAATCAAAGTTCCCCCCTTTTCTATTTTCCTTTAGCTTGTCAACGTTACATACCATTGAGACTCACCATTTGTACGTCGTGATATTGGCAGACTTTCA GGAGATCAATCGGGGGCCAAAGCTCTTACGCTGGACGTGTTTCAATGTTTGCACAGCAGGCTTGGCTTGA
AA sequence Show only first row Show all	>Lus10016999 pacid=23173027 polypeptide=Lus10016999 locus=Lus10016999.g ID=Lus10016999.BGIv1.0 annot-version=v1.0 MDVVERFENFLFSTVVFLDPVGRILGRQRKLIPLPSESGIWCSGGKSSSLPLFQTLFRSVGGLISWDSKLPFLRNELYAKFRQRNDYPLADGDGNGNASA SISSGGNFIASPSGKFLSEPNHEGECLISADLGNESKFPPFLFSFSLSTLHTIETHHLYVVILADFQEINRGPKLLRWTCFNVCTAGLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22300		AtNIT4, NIT4	nitrilase 4 (.1)		Lus10016999 [exp]	0	1
AT3G12250	bZIP	BZIP45, TGA6	TGACG motif-binding factor 6 (...		Lus10024140 [exp]	1.0	0.9636
AT1G55680			Transducin/WD40 repeat-like su...		Lus10035667 [exp]	3.5	0.9473
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10034468 [exp]	5.7	0.9416
AT2G44140			Peptidase family C54 protein (...		Lus10025609 [exp]	5.9	0.9359
AT3G56320			PAP/OAS1 substrate-binding dom...		Lus10029045 [exp]	6.5	0.9339
AT5G16800			Acyl-CoA N-acyltransferases (N...		Lus10013457 [exp]	8.0	0.9242
AT2G26430		ATRCY1, RCY1	arginine-rich cyclin 1 (.1.2.3...		Lus10041418 [exp]	8.1	0.9340
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Lus10025743 [exp]	8.7	0.9214
AT3G12250	bZIP	BZIP45, TGA6	TGACG motif-binding factor 6 (...		Lus10026166 [exp]	10.4	0.9299
AT4G08480		MEKK2, MAPKKK9	MAPK/ERK KINASE KINASE 2, mito...		Lus10029657 [exp]	10.8	0.9262

Compare expression of checked genes

Lus10016999 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.