Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20690 263 / 8e-88 lumazine-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021323 [exp] 521 / 0 AT2G20690 276 / 6e-93 lumazine-binding family protein (.1) Lus10039826 [exp] 0 / 1 AT2G20690 239 / 4e-78 lumazine-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G100500 [exp] 296 / 1e-100 AT2G20690 325 / 1e-112 lumazine-binding family protein (.1) Potri.013G131800 [exp] 295 / 2e-100 AT2G20690 323 / 1e-111 lumazine-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0076 [flax] [poplar] FAD_Lum_binding PF00677 [flax] [poplar] Lum_binding Lumazine binding domain
Representative CDS sequence Show only first row Show all	>Lus10017000 pacid=23172933 polypeptide=Lus10017000 locus=Lus10017000.g ID=Lus10017000.BGIv1.0 annot-version=v1.0 ATGGCGCTTCGATTCTCTCTCACAACCCCGGCCAATTCACCGGCAATCGCCTCCGGGAGAAATCGATTACCACCAAAACCCGCAAAGACAGCACTCAATT TCTCACCCATCACCACCCCACACCTCCAATCCGCACCTTCCTCCTTCTTCATCAATCCAATCCCAGTCTCCAGATCCAACCACCACCACCAGCCGCCACG ATTCGCCACAACAATCACCTGCCTCTTCACCGGAATCGTGGAAGAGATCGGCGAAGTCAAGCGCCTGGGCACTACCTCCGACGGCAGCGGCTACGATCTC AAGATCCGAGCGAAAACCGTCCTGGGCGGAGTAAACCTAGGAGACAGCATCGCCGTTAACGGAACCTGCTTAACGGTGACGGAATTCACGGAAAACGAAT TCACGACCGGAGTATCTCCAGAGACTCTAAGGAAGACGTCACTAGCGGGTCTACAGCCCGGGTCGCGGGTCAACCTGGAGCGGGCGGTCCAGCCCACGAC CCGGATGGGGGGCCATTTCGTGCAGGGACACGTGGATTGTACGGGGGAGATTCTGAGCAAGGAGAAAGAAGGGGATTCTCTGTGGATCAAAGTGGAGGTT GGGGATCGGAAGGTATTGAGGTACATTGTGCCGAAAGGGTTCATCGCCGTGGACGGGACGAGTTTGACGGTGGTGGATGTGGATGAAGAAGGTGGCTGGT TTAACTTCATGCTGGTGGCTTATACGCAGGGGGAGGTCGTGATCCCGGGGAAGGAGGTTGGGGAGAAGGTGAATTTGGAGGTGGATATATTGGGGAAGTA TGTTGAGAGGCTTCTTAGCTGTGGGGTTGTTGAATCCATGGCGATGAAGAAGAATTCGGATTTGTGA
AA sequence Show only first row Show all	>Lus10017000 pacid=23172933 polypeptide=Lus10017000 locus=Lus10017000.g ID=Lus10017000.BGIv1.0 annot-version=v1.0 MALRFSLTTPANSPAIASGRNRLPPKPAKTALNFSPITTPHLQSAPSSFFINPIPVSRSNHHHQPPRFATTITCLFTGIVEEIGEVKRLGTTSDGSGYDL KIRAKTVLGGVNLGDSIAVNGTCLTVTEFTENEFTTGVSPETLRKTSLAGLQPGSRVNLERAVQPTTRMGGHFVQGHVDCTGEILSKEKEGDSLWIKVEV GDRKVLRYIVPKGFIAVDGTSLTVVDVDEEGGWFNFMLVAYTQGEVVIPGKEVGEKVNLEVDILGKYVERLLSCGVVESMAMKKNSDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20690			lumazine-binding family protei...		Lus10017000 [exp]	0	1
AT4G28230			unknown protein		Lus10031619 [exp]	2.2	0.9015
AT2G04280			unknown protein		Lus10036415 [exp]	2.4	0.8976
AT4G39840			unknown protein		Lus10041688 [exp]	2.4	0.9002
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10026535 [exp]	5.1	0.8596
AT2G04280			unknown protein		Lus10041091 [exp]	6.3	0.8779
					Lus10007581 [exp]	9.4	0.8684
AT2G16600		ROC3	rotamase CYP 3 (.1.2)		Lus10007579 [exp]	11.2	0.8777
AT4G02500		ATXT2, XXT2	XYG XYLOSYLTRANSFERASE 2, ARAB...		Lus10037516 [exp]	11.2	0.8752
AT5G56040			Leucine-rich receptor-like pro...		Lus10042090 [exp]	12.2	0.8190
AT4G00390	GeBP		DNA-binding storekeeper protei...		Lus10028550 [exp]	12.8	0.8631

Compare expression of checked genes

Lus10017000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.