Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11590 450 / 2e-150 unknown protein AT1G50660 147 / 8e-37 unknown protein AT3G20350 142 / 2e-35 unknown protein AT5G22310 125 / 2e-30 unknown protein AT5G41620 117 / 3e-27 unknown protein AT1G64180 100 / 4e-22 intracellular protein transport protein USO1-related (.1) AT2G46250 73 / 2e-13 myosin heavy chain-related (.1) AT1G64690 44 / 0.0002 BLT BRANCHLESS TRICHOMES, branchless trichome (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021324 [exp] 848 / 0 AT3G11590 530 / 3e-180 unknown protein Lus10013312 [exp] 219 / 3e-63 AT3G11590 285 / 1e-88 unknown protein Lus10013311 [exp] 221 / 7e-63 AT3G11590 332 / 1e-105 unknown protein Lus10005200 [exp] 216 / 2e-61 AT3G11590 322 / 1e-101 unknown protein Lus10043111 [exp] 152 / 1e-38 AT1G50660 616 / 0.0 unknown protein Lus10017543 [exp] 151 / 4e-38 AT5G41620 500 / 6e-170 unknown protein Lus10021521 [exp] 149 / 2e-37 AT1G50660 750 / 0.0 unknown protein Lus10028746 [exp] 147 / 2e-37 AT5G41620 497 / 4e-170 unknown protein Lus10032637 [exp] 148 / 4e-37 AT1G50660 625 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G207800 [exp] 605 / 0 AT3G11590 582 / 0.0 unknown protein Potri.016G074300 [exp] 603 / 0 AT3G11590 560 / 0.0 unknown protein Potri.004G199500 [exp] 319 / 1e-99 AT3G11590 399 / 6e-131 unknown protein Potri.009G160900 [exp] 297 / 6e-92 AT3G11590 399 / 9e-132 unknown protein Potri.001G096200 [exp] 152 / 9e-39 AT5G41620 523 / 6e-180 unknown protein Potri.011G090100 [exp] 148 / 3e-37 AT1G50660 689 / 0.0 unknown protein Potri.003G135000 [exp] 142 / 3e-35 AT5G41620 494 / 1e-167 unknown protein Potri.002G166600 [exp] 141 / 4e-35 AT5G41620 345 / 6e-110 unknown protein Potri.014G093400 [exp] 138 / 6e-34 AT5G41620 347 / 8e-111 unknown protein Potri.004G015800 [exp] 134 / 1e-32 AT1G50660 390 / 1e-126 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017001 pacid=23172985 polypeptide=Lus10017001 locus=Lus10017001.g ID=Lus10017001.BGIv1.0 annot-version=v1.0 ATGCCGAGGCAGAATCGGTCGGCGGCGGAGGAACTGCTGCCGGGGAAAATCAGGAAACGAGGGTGTTCCTCTTCGGCGTCGTCGTCGTCTTCCGTCATTC ACAACTACAGGTTCAAAAGAGCGATTCTGGTAGGGAAGAGACCACCTGGATCCATTACTCCGCTACCCACATGGCGCTTGATTGGATCCACCACCACTCG TACTCCCTCGTCGGCTTCACGCGCCGCCGTATGCTCACCCAAGTACTCCGCTTCCTTACACGGCTACGCCGGCGCTGGTAAGGGTAAGCAACATCATCAT CATCAGCAGCAACAGCAGGGACCGGTGTCGGCGAGGAAATTGGCGGCGACGCTTTGGGAGATGAACGAGGTTCCTTCGCCGAGAAGGCCGGAGACCTCGG AGGAGAGGAGGCTGAGGAAGGATGCTAAAGCTAAGGAGAGAGCAGCGGTGGCTTCTAGGTCTGTTCATTCTGGTTCTTTGCCTCCCCATTTGTCTGATCC TTCTCACAGCCCTGTTTCTGAGAGGGGGGATCGATCAGGGATTGGTAGCCGCCACAGAAGATCACCATCAATTTCTCAGAAGCTTAGGGTTATGGATCAG AATGTTGCTCCATTTGATTCCGTTAGCAATGCTAGCTTCATGGAGATTGAGAGTAGGTCCCGGGTCCAAACACCTACTGGATCAACTACAGGTGCGACGA AAACTCGTTTGAAGGATGTCAGCAATGCGTTGACTACATCTAAAGAACTGCTTAAGATCATTAACCGAGTATGGGGGAACGAAGACCGACCTTCATCCAG CATGTCTCTGATGTCGGCATTGCACGCTGAGCTGGAGAGGGCAAGGTTACAGGTCAATCAGGCTATCCACGAGCAACGTGCTGACCAGAACGATATCACT TACCTGATGAAGTGCTTCGCCGAAGAGAAGGCAGTGTGGAAGAACAAAGAGCATAAGCTGGTGGAGGCTGCCATCGAGTCTGTTGCTGGAGAATTGGAGG TGGAGAAGAAGTTGAGGAGGAGGTTTGAGAGCTTGAACAAGAAGCTGGGGAAGGAACTGTCCGAGACTAAGGCTTCATTAGTTAAGGCGGTGAAGGAGCT CGATCAGGAGAAGAGAGCTAGAGCTGTGATGGAGCATGTGTGTGACGAATTGGCGAATGACATTGGGGAGGATAAAGCTGAAGCTGAGGAAATCAAGAGG GAATCCGTGAAGCTGTATGAGGAAGTGGAGAAGGAGAGGGAGATGATGCAGTTGGCTGATTCTTTGCGTGAGGAGAGAGTGCATATGAAGCTCTCGGAAG CTAAGCATCAGCTGGAGGAGAAAAATGCTGCTGTTGATAAGTTGAGGGGCCAACTTGAAGTGTTTTTAGGAGGAGCCAAAAGAGGAAAAGGGAAAGGAGT ACGCCGTTTGAATGATGATTATGATGACGAGGACAATGATGATCACATTAGAGCTTATCTAAGTACAGCCCATTTGGGTTTGTATCAGGATGATAATGGA GAGATAGAGAATGGAGAAGTATGCAATGAAGACGACACTGCTGATAGTGATCTTCACTCCATAGAGTTAGGATTGAACTCTAACAAGTTATCATCATGCA AATCGCTGTATGGTTCTGCAACTCCTCGCAATATTGGGAACCTCATCGACGAAGAAGGAATCATAATGGATAGGAAGTCCAACTTAGGGAAGGTATCATC CAGGAGAAATGGTTCTCTACAAAGAAGCATATCAGATGTTTCTGGGGACGGATTAGACAGGGGAAGATTAAGCGAATTCGAGAGGCCTTCCCACGGGAAA TCATATGGAGCTGATATCCACGGGCATCAATCAATGAAGGGTCGTCGAGACTTGCTACTGTGTGGTTCTGGGGCCGACAGTGCACACAGCTACGGGAGTA GTAGTCCCAATAGACAAGTACTGCAGCAGCATTCAAGGCTATCGGCTCAGGATCGGCCTCCCATGGCACCAGGGATCGCATCGAGATCAAGGCTATCAGA CAGCAGGATTGAATCACAAACCAGTGGCAGGAAATCTCGAAGGTGA
AA sequence Show only first row Show all	>Lus10017001 pacid=23172985 polypeptide=Lus10017001 locus=Lus10017001.g ID=Lus10017001.BGIv1.0 annot-version=v1.0 MPRQNRSAAEELLPGKIRKRGCSSSASSSSSVIHNYRFKRAILVGKRPPGSITPLPTWRLIGSTTTRTPSSASRAAVCSPKYSASLHGYAGAGKGKQHHH HQQQQQGPVSARKLAATLWEMNEVPSPRRPETSEERRLRKDAKAKERAAVASRSVHSGSLPPHLSDPSHSPVSERGDRSGIGSRHRRSPSISQKLRVMDQ NVAPFDSVSNASFMEIESRSRVQTPTGSTTGATKTRLKDVSNALTTSKELLKIINRVWGNEDRPSSSMSLMSALHAELERARLQVNQAIHEQRADQNDIT YLMKCFAEEKAVWKNKEHKLVEAAIESVAGELEVEKKLRRRFESLNKKLGKELSETKASLVKAVKELDQEKRARAVMEHVCDELANDIGEDKAEAEEIKR ESVKLYEEVEKEREMMQLADSLREERVHMKLSEAKHQLEEKNAAVDKLRGQLEVFLGGAKRGKGKGVRRLNDDYDDEDNDDHIRAYLSTAHLGLYQDDNG EIENGEVCNEDDTADSDLHSIELGLNSNKLSSCKSLYGSATPRNIGNLIDEEGIIMDRKSNLGKVSSRRNGSLQRSISDVSGDGLDRGRLSEFERPSHGK SYGADIHGHQSMKGRRDLLLCGSGADSAHSYGSSSPNRQVLQQHSRLSAQDRPPMAPGIASRSRLSDSRIESQTSGRKSRR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11590			unknown protein		Lus10017001 [exp]	0	1
AT3G11590			unknown protein		Lus10021324 [exp]	1.0	0.9281
AT3G03773			HSP20-like chaperones superfam...		Lus10010669 [exp]	1.7	0.8652
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Lus10036132 [exp]	2.8	0.8716
AT3G50780			unknown protein		Lus10022484 [exp]	3.5	0.8486
AT2G47230		ATDUF6	DOMAIN OF UNKNOWN FUNCTION 724...		Lus10004508 [exp]	6.3	0.8576
AT2G30933			Carbohydrate-binding X8 domain...		Lus10001516 [exp]	6.7	0.8548
					Lus10006886 [exp]	7.3	0.7911
AT5G66730	C2H2ZnF	IDD1, ENY	INDETERMINATE DOMAIN 1, ENHYDR...		Lus10007168 [exp]	7.5	0.7907
AT3G15630			unknown protein		Lus10033048 [exp]	8.5	0.7829
AT5G15080			Protein kinase superfamily pro...		Lus10006643 [exp]	9.4	0.8406

Compare expression of checked genes

Lus10017001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.