Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24280 427 / 4e-147 alpha/beta-Hydrolases superfamily protein (.1) AT5G65760 420 / 3e-144 Serine carboxypeptidase S28 family protein (.1) AT5G22860 276 / 3e-88 Serine carboxypeptidase S28 family protein (.1.2) AT3G28680 95 / 9e-23 Serine carboxypeptidase S28 family protein (.1) AT2G18080 90 / 3e-19 EDA2 embryo sac development arrest 2, Serine carboxypeptidase S28 family protein (.1) AT4G36190 86 / 5e-18 Serine carboxypeptidase S28 family protein (.1) AT4G36195 84 / 3e-17 Serine carboxypeptidase S28 family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021325 [exp] 758 / 0 AT2G24280 515 / 5e-180 alpha/beta-Hydrolases superfamily protein (.1) Lus10011603 [exp] 393 / 8e-134 AT5G65760 753 / 0.0 Serine carboxypeptidase S28 family protein (.1) Lus10008358 [exp] 301 / 9e-98 AT5G22860 486 / 1e-168 Serine carboxypeptidase S28 family protein (.1.2) Lus10005354 [exp] 300 / 3e-97 AT5G22860 557 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Lus10021400 [exp] 298 / 2e-96 AT5G22860 558 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Lus10005353 [exp] 295 / 1e-95 AT5G22860 476 / 3e-165 Serine carboxypeptidase S28 family protein (.1.2) Lus10039645 [exp] 206 / 1e-62 AT5G65760 374 / 7e-127 Serine carboxypeptidase S28 family protein (.1) Lus10028365 [exp] 82 / 1e-16 AT4G36195 655 / 0.0 Serine carboxypeptidase S28 family protein (.1.2.3) Lus10041817 [exp] 56 / 2e-08 AT4G36190 325 / 1e-108 Serine carboxypeptidase S28 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G207900 [exp] 551 / 0 AT2G24280 563 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.018G111000 [exp] 426 / 1e-146 AT2G24280 728 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G008100 [exp] 415 / 4e-142 AT5G65760 783 / 0.0 Serine carboxypeptidase S28 family protein (.1) Potri.018G018500 [exp] 339 / 2e-112 AT5G22860 522 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.010G232300 [exp] 335 / 6e-111 AT5G22860 528 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.009G002300 [exp] 332 / 5e-110 AT5G22860 449 / 1e-154 Serine carboxypeptidase S28 family protein (.1.2) Potri.001G212900 [exp] 332 / 9e-110 AT5G22860 481 / 6e-167 Serine carboxypeptidase S28 family protein (.1.2) Potri.001G213300 [exp] 327 / 4e-108 AT5G22860 588 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.009G002200 [exp] 325 / 5e-107 AT5G22860 534 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.001G213500 [exp] 320 / 3e-105 AT5G22860 593 / 0.0 Serine carboxypeptidase S28 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF05577 [flax] [poplar] Peptidase_S28 Serine carboxypeptidase S28
Representative CDS sequence Show only first row Show all	>Lus10017002 pacid=23172952 polypeptide=Lus10017002 locus=Lus10017002.g ID=Lus10017002.BGIv1.0 annot-version=v1.0 ATGTTCGACATCGCCCCAAAGTTCAACGCCCTCTTAGTCTTCATCGAGCATAGGTTCTACGGGAAGTCGATTCCATTCGGAGGAGATAAACACAAGGCGT ACAAGGATGCTAGAACACTGGGATACCTTAGCACCACGCAAGCATTAGCAGATTTCGCCACGCTAATTGTCGACCTCAAGAAGAACCTCTCCGCTACAGA GTCCCCTGTTGTGCTCTTCGGCGGCTCCTATGGCGGAATGCTGGCGGCTTGGTTTAGGCTCAAGTATCCGCATATAGCAATAGGAGCTTTAGCGTCTTCC GCGCCAATCCTAGACTTCGACGATCTAACCTCTCCGTACAGCTTCAACTCCATCGTCACTCGAGATTTCAGGAGTGAGAGCGAGAGCTGCTACAGAACGA TCAAAGAATCATGGGATCTGATCGCTCACACGACAACCCAACCCGGAGGATTGCACAAGCTGCAGAGGTCGTTTCACCTATGCAAGAAGGAGGATGCGAC ATACCTGTCAGGGTGGCTACGTACGGCGTGGGTGTACACAGCGATGACTGATTATCCAACTGCCTCGAATTTTCTGGCGCCATTGCCGGCTTATCCGGTG AGAGAGATGTGCCGAGCAATTGACGATCCAAAAACCGGAAACGATTCATTCGCCAAGCTTTATGCCGCAGCTAGCGTCTATTATAACTACACAGGATCCG CCGACTCCGGCTGTTTCAGTTTCGCCTACGATTCTGATTCTGACGACCTCGGATCCGAGGGATGGAATTGGCAGGCTTGTACAGAGATGGTGATGCCACA AGGAGGAAGCGACGAGGAAAGTATATTCCCAGCTTGGAGATGGAGCTACGATGATAACTCCTCCTGCGACAAGGAGTACGACATTTTCCCTCGTAGAAAC TGGATCACCACCGAATTCGGCGGACATAGGATTAAGGAAGTGCTGAAGAGGTATGGCAGCAACATCATCTTCTTCAATGGCTTGAGAGACCCTTGGAGTG GAGGAGGGGTGTTGGAGAGTATCTCCAGCAGCATAGTTGCAATCGTCGCAGAAGAAGGTGCTCACCACGTGGATCTCAGATTTGCGACGAGCCAGGATCC GGAATGGCTTCGGCAAGTGAGGAATGTAGAGATCAAAATTATTCGAAAGTGGCTGGCTCAGTATCATAGTGATATGGGCCGTTCAAGGCCCAATAACCTT AAGAAGCCTAGAGTCCATATCTATTAA
AA sequence Show only first row Show all	>Lus10017002 pacid=23172952 polypeptide=Lus10017002 locus=Lus10017002.g ID=Lus10017002.BGIv1.0 annot-version=v1.0 MFDIAPKFNALLVFIEHRFYGKSIPFGGDKHKAYKDARTLGYLSTTQALADFATLIVDLKKNLSATESPVVLFGGSYGGMLAAWFRLKYPHIAIGALASS APILDFDDLTSPYSFNSIVTRDFRSESESCYRTIKESWDLIAHTTTQPGGLHKLQRSFHLCKKEDATYLSGWLRTAWVYTAMTDYPTASNFLAPLPAYPV REMCRAIDDPKTGNDSFAKLYAAASVYYNYTGSADSGCFSFAYDSDSDDLGSEGWNWQACTEMVMPQGGSDEESIFPAWRWSYDDNSSCDKEYDIFPRRN WITTEFGGHRIKEVLKRYGSNIIFFNGLRDPWSGGGVLESISSSIVAIVAEEGAHHVDLRFATSQDPEWLRQVRNVEIKIIRKWLAQYHSDMGRSRPNNL KKPRVHIY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24280			alpha/beta-Hydrolases superfam...		Lus10017002 [exp]	0	1
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10021103 [exp]	1.7	0.9490
AT3G50120			Plant protein of unknown funct...		Lus10010064 [exp]	6.0	0.9218
AT2G28690			Protein of unknown function (D...		Lus10005884 [exp]	6.5	0.9022
AT5G62680			Major facilitator superfamily ...		Lus10033106 [exp]	7.7	0.9105
AT1G32440		PKP3	plastidial pyruvate kinase 3 (...		Lus10011057 [exp]	10.1	0.9192
AT5G19730			Pectin lyase-like superfamily ...		Lus10012942 [exp]	10.5	0.9157
AT3G44260		AtCAF1a	CCR4- associated factor 1a, Po...		Lus10004212 [exp]	11.7	0.9111
AT1G03280			Transcription factor TFIIE, al...		Lus10011554 [exp]	13.0	0.8966
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Lus10017066 [exp]	14.0	0.9161
AT2G43590			Chitinase family protein (.1)		Lus10010861 [exp]	15.5	0.9011

Compare expression of checked genes

Lus10017002 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.