Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06240 180 / 9e-59 EMB2735 embryo defective 2735 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021327 [exp] 283 / 2e-99 AT5G06240 210 / 1e-70 embryo defective 2735 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G074700 [exp] 215 / 1e-72 AT5G06240 215 / 2e-72 embryo defective 2735 (.1) Potri.006G208200 [exp] 58 / 8e-12 AT5G06240 67 / 2e-15 embryo defective 2735 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017003 pacid=23173007 polypeptide=Lus10017003 locus=Lus10017003.g ID=Lus10017003.BGIv1.0 annot-version=v1.0 ATGAAGACGAAAGTGGTGAGCCGCAAACTGTATGATTACGTCCGCTACGACTTGAAAGAAATTGCGTTCCCGTCCTCTCTCCCCAACCCTCCTCACATCA AACCACGTCCCGAATTGACCTTCTACGATCGTTTCCTTATTCTGAAGAAGGCGACGAGGCTTTATTGTGCGAGCTGGGTGAGGGATATAGGTCCCGACCT TCGCCCAAATGATTACAAGAAGCGGAAAGAGAGCGAAGATAACCCAGATGGAACAAATTCTGGAGTGAAGGAGCCATCAGTGCTTGAAGATCTTGCGGTG GCTGCAAGAGGTGGCGCCGACACCTTGAAACCAGCCTTGCAGAGGTTGTACATGACCAGAGCTTCTGCATACCGAGATGCTCTGAAAAGTTTCATAGAAG GGTATCAGGAAGGTGTCCAGCAGGTTGTGGAGAAGAAGCAAGAATCTGAAACTGGACATGAGGGAGACACTCCTAAGAAATCATTATGA
AA sequence Show only first row Show all	>Lus10017003 pacid=23173007 polypeptide=Lus10017003 locus=Lus10017003.g ID=Lus10017003.BGIv1.0 annot-version=v1.0 MKTKVVSRKLYDYVRYDLKEIAFPSSLPNPPHIKPRPELTFYDRFLILKKATRLYCASWVRDIGPDLRPNDYKKRKESEDNPDGTNSGVKEPSVLEDLAV AARGGADTLKPALQRLYMTRASAYRDALKSFIEGYQEGVQQVVEKKQESETGHEGDTPKKSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06240		EMB2735	embryo defective 2735 (.1)		Lus10017003 [exp]	0	1
AT5G53070			Ribosomal protein L9/RNase H1 ...		Lus10005909 [exp]	9.3	0.8511
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10010764 [exp]	10.9	0.8543
AT4G19540		INDH, INDL	IND1(iron-sulfur protein requi...		Lus10018779 [exp]	16.2	0.8539
AT3G14460			LRR and NB-ARC domains-contain...		Lus10039548 [exp]	20.8	0.8436
AT5G63030		GRXC1	glutaredoxin C1, Thioredoxin s...		Lus10001237 [exp]	25.7	0.8493
					Lus10029247 [exp]	37.9	0.7990
AT1G04530		TPR4	tetratricopeptide repeat 4, Te...		Lus10000257 [exp]	42.7	0.8313
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10029242 [exp]	55.2	0.8266
AT1G79230		STR1, ATRDH1, A...	ARABIDOPSIS THALIANA RHODANESE...		Lus10031753 [exp]	60.8	0.8100
					Lus10034710 [exp]	69.4	0.8270

Compare expression of checked genes

Lus10017003 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.