Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11570 494 / 1e-174 TBL8 TRICHOME BIREFRINGENCE-LIKE 8 (.1) AT5G06230 467 / 6e-165 TBL9 TRICHOME BIREFRINGENCE-LIKE 9 (.1.2) AT3G06080 340 / 9e-114 TBL10 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT5G19160 332 / 1e-110 TBL11 TRICHOME BIREFRINGENCE-LIKE 11 (.1) AT5G20590 299 / 2e-97 TBL5 TRICHOME BIREFRINGENCE-LIKE 5 (.1) AT3G62390 298 / 2e-97 TBL6 TRICHOME BIREFRINGENCE-LIKE 6 (.1) AT1G60790 283 / 2e-90 TBL2 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) AT3G12060 278 / 2e-88 TBL1 TRICHOME BIREFRINGENCE-LIKE 1, Plant protein of unknown function (DUF828) (.1) AT5G06700 279 / 3e-88 TBR TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) AT1G48880 263 / 8e-84 TBL7 TRICHOME BIREFRINGENCE-LIKE 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021328 [exp] 698 / 0 AT3G11570 504 / 1e-178 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Lus10004225 [exp] 588 / 0 AT3G11570 518 / 0.0 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Lus10000250 [exp] 548 / 0 AT3G11570 428 / 7e-150 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Lus10029430 [exp] 510 / 0 AT3G11570 443 / 2e-155 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Lus10034041 [exp] 333 / 7e-111 AT5G19160 605 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Lus10034039 [exp] 332 / 2e-110 AT3G06080 553 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10041219 [exp] 327 / 8e-109 AT5G19160 514 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Lus10003734 [exp] 318 / 4e-105 AT3G06080 540 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10028025 [exp] 313 / 7e-103 AT3G06080 520 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G074800 [exp] 513 / 0 AT3G11570 506 / 2e-179 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Potri.008G203900 [exp] 347 / 2e-116 AT5G19160 652 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Potri.002G054400 [exp] 323 / 3e-107 AT3G06080 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.006G208251 [exp] 309 / 4e-103 AT3G11570 280 / 1e-91 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Potri.008G108500 [exp] 296 / 2e-96 AT5G49340 460 / 7e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Potri.T171301 [exp] 295 / 3e-96 AT5G49340 461 / 2e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Potri.010G043300 [exp] 291 / 1e-93 AT1G60790 604 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Potri.018G133000 [exp] 290 / 1e-93 AT5G20590 606 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.006G071500 [exp] 290 / 1e-93 AT5G20590 633 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.002G195800 [exp] 288 / 3e-92 AT3G62390 593 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10017004 pacid=23173001 polypeptide=Lus10017004 locus=Lus10017004.g ID=Lus10017004.BGIv1.0 annot-version=v1.0 ATGATTCGGAGCGAGCTTGTCTACGCCACATTAATCCCGTTCCTCCTCATCGTCGTCGTTTCATCCCTCTCTCTCTTCCATCCCATCTCATACTTTCGGG TCGGCTTCCTGCATCCGCCGAGAAGGATTTGCCGTGACCGGCGGGAATACAGCGAAGGAGAGTGGGTCCGGAACAACAAGGTTGCATCATCATCATCATC ATGGTATGGGGAAAGCTGCCCGTTTCTTGATCCTGGGTTCCGTTGCCGACGGAACGGCAGGGGCGACGTGGAGTACCTCGAGTGGCGGTGGCAGCCACGT GAATGTGATCTGCCCAGATTCAACGCGACGGACTTGCTCGAAAGGACGAGGAACGGCAGGATAGTGTTTGCTGGAGACTCGATCGGAAGGAACCAGTGGG AGTCGTTCCTATGCATGCTAGGACAAGGAGTCTCCAATGTCTCCACAATCTACGAAGTGAATGGAAACCCAATCACGAAGCACAGAGGGTTTCTCATCAT GCGCTTCAGCGAATACAACCTCACAGTTGAATACTACAGGTTACCTTTCCTGGTATCCCTCGGCCGGCCACCCAAGGATTCCCTGCCTGATGTCAAGATG GGAATCCAGATTGACCGGTTGCACTGGTTCTCGAAAAATTGGGTCGGGGCTGACGTTCTAGTGTTCAACACGGGACACTGGTGGAAGGAGTACAAAACTA TCTACATGGGATACTATTTCGAAGAAGCGGGTGAAGTAAACACATCGATGGGAGTAAGGGAAGCATTCGAGAAATCGCTGCGAACATGGAAGAAATGGGT GACAGAGAATTTGGATAGTGAAAGGAGTCACGTTTTCTTTCGCAGTTATTCTCCGGCACATTACAGGAGCGGGACATGGAACGAAGGAGGGCATTGCGAT TTGGACCTCCAACCAGTGACGAATCCGGAACTTCTAAAACCTGAGCCGAGAACCAACCGACCCATCTCTGAGGTGATTACAGAGATGATAGGGACGAACA AGAAAGTTGAGTACTTGAACATTACACATCTGACAGAGTACAGATTCGACGGCCACCCATCACGCTACCGTGAACCAGGAACTCCACAGGAAGCTCCACA AGACTGCAGTCACTGGTGCCTTCCAGGAGTCCCCGATGTGTGGAATGAGATATTGTATGCTCACTTGGTGTCAATGGGATTCAGAACCAAGTGA
AA sequence Show only first row Show all	>Lus10017004 pacid=23173001 polypeptide=Lus10017004 locus=Lus10017004.g ID=Lus10017004.BGIv1.0 annot-version=v1.0 MIRSELVYATLIPFLLIVVVSSLSLFHPISYFRVGFLHPPRRICRDRREYSEGEWVRNNKVASSSSSWYGESCPFLDPGFRCRRNGRGDVEYLEWRWQPR ECDLPRFNATDLLERTRNGRIVFAGDSIGRNQWESFLCMLGQGVSNVSTIYEVNGNPITKHRGFLIMRFSEYNLTVEYYRLPFLVSLGRPPKDSLPDVKM GIQIDRLHWFSKNWVGADVLVFNTGHWWKEYKTIYMGYYFEEAGEVNTSMGVREAFEKSLRTWKKWVTENLDSERSHVFFRSYSPAHYRSGTWNEGGHCD LDLQPVTNPELLKPEPRTNRPISEVITEMIGTNKKVEYLNITHLTEYRFDGHPSRYREPGTPQEAPQDCSHWCLPGVPDVWNEILYAHLVSMGFRTK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Lus10017004 [exp]	0	1
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Lus10021328 [exp]	1.0	0.9171
AT1G06340			Plant Tudor-like protein (.1)		Lus10009266 [exp]	1.7	0.8404
AT2G42940	AT-hook		Predicted AT-hook DNA-binding ...		Lus10007340 [exp]	2.2	0.8146
AT5G38260			Protein kinase superfamily pro...		Lus10027119 [exp]	3.2	0.8534
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10008975 [exp]	3.2	0.7887
AT3G02100			UDP-Glycosyltransferase superf...		Lus10021163 [exp]	7.9	0.7891
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Lus10014175 [exp]	8.5	0.8276
AT1G09157			Protein of unknown function (D...		Lus10030466 [exp]	8.8	0.8013
AT3G13850	AS2	LBD22	LOB domain-containing protein ...		Lus10003789 [exp]	10.4	0.7646
AT3G54900		ATGRXCP, CXIP1	GLUTAREDOXIN, CAX interacting ...		Lus10012592 [exp]	12.8	0.7249

Compare expression of checked genes

Lus10017004 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.