Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36090 239 / 4e-77 F-box family protein (.1) AT3G44326 218 / 4e-68 F-box family protein (.1) AT2G27310 203 / 1e-62 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021330 [exp] 543 / 0 AT2G36090 266 / 2e-87 F-box family protein (.1) Lus10013309 [exp] 205 / 2e-63 AT2G27310 247 / 4e-80 F-box family protein (.1) Lus10028024 [exp] 121 / 4e-31 AT2G27310 158 / 4e-45 F-box family protein (.1) Lus10003731 [exp] 121 / 4e-31 AT2G27310 160 / 3e-46 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G208400 [exp] 335 / 4e-114 AT2G36090 275 / 7e-91 F-box family protein (.1) Potri.004G199300 [exp] 250 / 9e-81 AT2G27310 248 / 3e-80 F-box family protein (.1) Potri.009G160700 [exp] 242 / 1e-77 AT2G27310 221 / 9e-70 F-box family protein (.1) Potri.002G054500 [exp] 126 / 4e-33 AT2G27310 122 / 2e-31 F-box family protein (.1) Potri.005G208200 [exp] 117 / 2e-29 AT2G27310 130 / 3e-34 F-box family protein (.1) Potri.001G452000 [exp] 115 / 7e-29 AT2G36090 115 / 2e-29 F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017006 pacid=23172978 polypeptide=Lus10017006 locus=Lus10017006.g ID=Lus10017006.BGIv1.0 annot-version=v1.0 ATGGCTTCTAATTCAGGCGATCAAGAAGCGTCATCCTCCACCTCTCTGTCGGTAATTCACCAGGATATTATCCGGGCACATATTCTGACGAGGCTCAACG GCGTCTCACTCCTCTCCGCTTCTTGCTCCTCCACCGAGCTAAGGTCCCTCGCTTCTCAGGAGAATTTGTGGGAGAATGTATGCCGGTCAACGTGGCCGTC TACCGACCTCCCTCACGTTCAGGAAGTGATATCCACTTTCCCCAACGGCCACCGATCCTTCTTCTCCGCTTCTTTTCCTCTGGTTGCCGATATGGAGCCT TACTCCAAACCAGCGGCGTCCGATTCGGGCATAATATTCTCGGAGGAATTGATTTCCGCGGTGGATATCTACCACCGTGGGGAGCTGATTTTCAGCAGGG CGGTGGAGACGGAGACTGTTACGGGATGGTTCCGGTGCTCGCCTTTTAGAATTGATTTGTTGGATCCGAAGGACACGTGTCCGACTAGGATACCTAGGCC GGAGACGGAGGCGGCCTGTCAGGACCTGGCGGAGGAACTGACGCTGAGCTGGGTTCTGATCGATCCGGAAGGCCGGCGGGCGGTGAACCTTTCGAGCCAC CGCCCCGCATCGACTCAGCAGCACCGGCCGAGCCACCGCCCCGTATCGGTTCAGAAGCACTGGCTGAGCGGGGACGTCCACGCACGATTCGGCGTAATAT TGGCCGGAGAGAGAGGGACGGCGTCGGAGTTTGTTCAGTGCGGGATAGTGGTCACGTGCGGGGGTGGGGTCCAGGAAGGGGCAATGCACGTGAGGGAGGT GAGCCTGCAGATGGAGAACATGGACGGAATGTACATAAACGGGAAGGACAGTATGGGGATTTTGGAAAAGACGTTCGGGGGCAAAAAGGGGATGATGAAG GAAAGAGGGGGGAGCAAGTACGAAGAGTTTCAGGGGTTGAAACGACAGCGTAGAGAGAGGAAACGGAGGGCAGAAGGGGCAATGGACACAATGTGCGTGG CGTCTGCAGTGTTGATATTTGCCTCTCTTGCCTTGCTTCTCATTTTGAGGCGATGA
AA sequence Show only first row Show all	>Lus10017006 pacid=23172978 polypeptide=Lus10017006 locus=Lus10017006.g ID=Lus10017006.BGIv1.0 annot-version=v1.0 MASNSGDQEASSSTSLSVIHQDIIRAHILTRLNGVSLLSASCSSTELRSLASQENLWENVCRSTWPSTDLPHVQEVISTFPNGHRSFFSASFPLVADMEP YSKPAASDSGIIFSEELISAVDIYHRGELIFSRAVETETVTGWFRCSPFRIDLLDPKDTCPTRIPRPETEAACQDLAEELTLSWVLIDPEGRRAVNLSSH RPASTQQHRPSHRPVSVQKHWLSGDVHARFGVILAGERGTASEFVQCGIVVTCGGGVQEGAMHVREVSLQMENMDGMYINGKDSMGILEKTFGGKKGMMK ERGGSKYEEFQGLKRQRRERKRRAEGAMDTMCVASAVLIFASLALLLILRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36090			F-box family protein (.1)		Lus10017006 [exp]	0	1
AT1G07630		PLL5	pol-like 5 (.1)		Lus10024397 [exp]	1.7	0.9421
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10004318 [exp]	2.2	0.9237
AT2G33460		RIC1	ROP-interactive CRIB motif-con...		Lus10021974 [exp]	4.5	0.9279
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Lus10004876 [exp]	4.6	0.9312
AT3G10660		ATCPK2, CPK2	calmodulin-domain protein kina...		Lus10033400 [exp]	4.7	0.9354
					Lus10025897 [exp]	4.9	0.9223
AT1G07630		PLL5	pol-like 5 (.1)		Lus10025348 [exp]	6.0	0.9124
AT1G44170		ALDH4, ALDH3H1	aldehyde dehydrogenase 4, alde...		Lus10025681 [exp]	6.5	0.9217
AT4G37790	HD	HAT22	Homeobox-leucine zipper protei...		Lus10011569 [exp]	14.4	0.9180
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10015921 [exp]	23.0	0.9100

Compare expression of checked genes

Lus10017006 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.