Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08370 311 / 2e-104 DCP1, ATDCP1 decapping 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021331 [exp] 521 / 0 AT1G08370 305 / 1e-100 decapping 1 (.1) Lus10034186 [exp] 351 / 6e-120 AT1G08370 380 / 2e-131 decapping 1 (.1) Lus10043399 [exp] 342 / 3e-116 AT1G08370 375 / 2e-129 decapping 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G208600 [exp] 430 / 5e-151 AT1G08370 335 / 1e-113 decapping 1 (.1) Potri.016G075200 [exp] 413 / 2e-144 AT1G08370 294 / 1e-97 decapping 1 (.1) Potri.009G160200 [exp] 355 / 2e-121 AT1G08370 377 / 7e-130 decapping 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [flax] [poplar] PH PF06058 [flax] [poplar] DCP1 Dcp1-like decapping family
Representative CDS sequence Show only first row Show all	>Lus10017007 pacid=23172957 polypeptide=Lus10017007 locus=Lus10017007.g ID=Lus10017007.BGIv1.0 annot-version=v1.0 ATGTCTCAGCCGGGGAAATTGATGCCGAATCTAGATCAGCAAAGCACTAAGGTCCTCAATCTCACCGTGCTTCAGAGAATGGATCCATTTATCGAAGAGA TTCTGATCACGGCGGCTCACGTCACTTTCTACGAGTTCAACATCGACAATAGTCAGTGGGGTCGGAAGGATGTTGAAGGATCTCTATTCGTGGTTAAGAG GAATGCTCAGCCTCGGTTTCAGTTCATCGTCATGAATCGGAGAAACACAGAAAACCTGGTGGAGAATCTCTTGGGAGATTTTGAGTATGAGATTCAGCTT CCCTATCTGTTGTATCGTAATCCAAATCAAGAAGTTAACGGGATATGGTTTTACAATCCACGTGAATGCGAAGATGTAGCCAAGCTCTTTAGCAGGATTC TTAATGCCTACTCAAAGGTTCCTTCAAAACCTAAAGTGCCTTCAAACCAGAGTGAGTTTGAGGAGCTTGAAGCAGTTCCAAACATATCAGTGATCGAAGG ACCACTGGAGCCATCACCAATGCCTAGTGTTGTGTCCGAGGTTCCTCATGATACTTCATTTGAGAATTTCTTTAGTGCAACTGCAAATATTGGCAACACT GCTCCCAGTATGGCAAACTCTAGACAAAACTACCATCCTTCGTCATCGGTAGCAAACATGACTAGTGCTGTCTCGTCTCCCTCATTAACCCCTCAAGTCC TACCCCTCCCTCTTTCATCCATCTCGGGTTCAAAGGCTCACCACGAAACCCCCGATTCAGTGAGTGCTGGCAATCGGATTGCCAGTCTGCTGAAACCTTC TTTATTCTCTGTGCCATCTGCCACTTCATCTTCGTTGATGATACCTCCTGTCTCTTCATCTCTCCCTACTACTGCTCATAATCAACCTGTAAGCATGCAA CGCTCATATGGCGCCCCAATGCTTCAACCTTTCCCCCCTCCCACTCCACCTCCATCTCTTACTCCAACTACTGCATCCACACCACTTCTTAGCCGAGACA AAGTCCGCGATGCACTTCTAAAGCTTGTTCAGGACGACCAATTCATCGACATGTTTTATCAAGCTTTGACAAAGGTGCAGCATACGTGA
AA sequence Show only first row Show all	>Lus10017007 pacid=23172957 polypeptide=Lus10017007 locus=Lus10017007.g ID=Lus10017007.BGIv1.0 annot-version=v1.0 MSQPGKLMPNLDQQSTKVLNLTVLQRMDPFIEEILITAAHVTFYEFNIDNSQWGRKDVEGSLFVVKRNAQPRFQFIVMNRRNTENLVENLLGDFEYEIQL PYLLYRNPNQEVNGIWFYNPRECEDVAKLFSRILNAYSKVPSKPKVPSNQSEFEELEAVPNISVIEGPLEPSPMPSVVSEVPHDTSFENFFSATANIGNT APSMANSRQNYHPSSSVANMTSAVSSPSLTPQVLPLPLSSISGSKAHHETPDSVSAGNRIASLLKPSLFSVPSATSSSLMIPPVSSSLPTTAHNQPVSMQ RSYGAPMLQPFPPPTPPPSLTPTTASTPLLSRDKVRDALLKLVQDDQFIDMFYQALTKVQHT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08370		DCP1, ATDCP1	decapping 1 (.1)		Lus10017007 [exp]	0	1
AT3G02540		RAD23C, RAD23-3	RADIATION SENSITIVE23C, PUTATI...		Lus10034308 [exp]	2.0	0.6928
AT3G56720			unknown protein		Lus10027280 [exp]	2.6	0.7197
					Lus10014959 [exp]	6.9	0.7060
AT1G54460			TPX2 (targeting protein for Xk...		Lus10005533 [exp]	10.5	0.6702
AT3G26120		TEL1	terminal EAR1-like 1 (.1)		Lus10006234 [exp]	17.0	0.7080
AT5G42630	GARP	KAN4, KANADI4, ...	KANADI 4, ABERRANT TESTA SHAPE...		Lus10011660 [exp]	20.1	0.6781
AT3G61650		TUBG1	gamma-tubulin (.1)		Lus10010985 [exp]	22.4	0.6770
AT1G66680		AR401	S-adenosyl-L-methionine-depend...		Lus10017619 [exp]	26.9	0.6032
AT2G01140		PDE345	PIGMENT DEFECTIVE 345, Aldolas...		Lus10013477 [exp]	47.5	0.6315
AT4G35240			Protein of unknown function (D...		Lus10014445 [exp]	50.1	0.6582

Compare expression of checked genes

Lus10017007 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.