Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06200 145 / 1e-43 CASP4 Casparian strip membrane domain protein 4, Uncharacterised protein family (UPF0497) (.1) AT3G11550 144 / 2e-43 CASP2 Casparian strip membrane domain protein 2, Uncharacterised protein family (UPF0497) (.1) AT2G36100 138 / 6e-41 CASP1 Casparian strip membrane domain protein 1, Uncharacterised protein family (UPF0497) (.1) AT2G27370 127 / 3e-36 CASP3 Casparian strip membrane domain protein 3, Uncharacterised protein family (UPF0497) (.1) AT5G15290 102 / 3e-27 CASP5 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1) AT1G14160 97 / 6e-25 Uncharacterised protein family (UPF0497) (.1) AT3G06390 47 / 1e-06 Uncharacterised protein family (UPF0497) (.1) AT1G03700 42 / 5e-05 Uncharacterised protein family (UPF0497) (.1) AT4G03540 42 / 5e-05 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021332 [exp] 229 / 2e-76 AT2G36100 229 / 1e-76 Casparian strip membrane domain protein 1, Uncharacterised protein family (UPF0497) (.1) Lus10021333 [exp] 164 / 5e-51 AT3G11550 246 / 1e-83 Casparian strip membrane domain protein 2, Uncharacterised protein family (UPF0497) (.1) Lus10004205 [exp] 150 / 1e-45 AT3G11550 232 / 8e-78 Casparian strip membrane domain protein 2, Uncharacterised protein family (UPF0497) (.1) Lus10017009 [exp] 160 / 3e-45 AT3G11540 1356 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10029409 [exp] 148 / 1e-44 AT3G11550 234 / 9e-79 Casparian strip membrane domain protein 2, Uncharacterised protein family (UPF0497) (.1) Lus10015375 [exp] 109 / 9e-30 AT5G15290 219 / 1e-73 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1) Lus10033007 [exp] 105 / 2e-28 AT5G15290 216 / 3e-72 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1) Lus10037160 [exp] 89 / 6e-22 AT1G14160 214 / 9e-71 Uncharacterised protein family (UPF0497) (.1) Lus10036770 [exp] 51 / 5e-08 AT1G14160 119 / 2e-34 Uncharacterised protein family (UPF0497) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G075400 [exp] 160 / 1e-49 AT5G06200 179 / 2e-57 Casparian strip membrane domain protein 4, Uncharacterised protein family (UPF0497) (.1) Potri.006G208800 [exp] 160 / 2e-49 AT5G06200 201 / 7e-66 Casparian strip membrane domain protein 4, Uncharacterised protein family (UPF0497) (.1) Potri.016G075300 [exp] 139 / 2e-41 AT5G06200 162 / 2e-50 Casparian strip membrane domain protein 4, Uncharacterised protein family (UPF0497) (.1) Potri.009G160000 [exp] 114 / 4e-31 AT2G27370 146 / 2e-43 Casparian strip membrane domain protein 3, Uncharacterised protein family (UPF0497) (.1) Potri.012G032300 [exp] 104 / 4e-28 AT5G15290 207 / 1e-68 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1) Potri.008G088700 [exp] 87 / 2e-21 AT1G14160 163 / 3e-51 Uncharacterised protein family (UPF0497) (.1) Potri.004G043300 [exp] 47 / 1e-06 AT4G03540 103 / 2e-28 Uncharacterised protein family (UPF0497) (.1) Potri.011G052100 [exp] 44 / 1e-05 AT4G03540 100 / 2e-27 Uncharacterised protein family (UPF0497) (.1) Potri.001G436400 [exp] 43 / 5e-05 AT1G17200 245 / 1e-82 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) Potri.013G131700 [exp] 41 / 0.0002 AT1G03700 159 / 9e-50 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [flax] [poplar] Marvel-like PF04535 [flax] [poplar] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Lus10017008 pacid=23173026 polypeptide=Lus10017008 locus=Lus10017008.g ID=Lus10017008.BGIv1.0 annot-version=v1.0 ATGTCGACTTCAATCGAGATGACAGAGGAAAGCAGCTCTGTGGCGAAGGGAAAAGCGCCTCTGATCACCACAACTACTTACAGCCACGACGACGGTCATC ATGCAAAGGGAAGAATCCATAGAAATAATTATAAGACTGCTGGCGGGTACAAGAAGGGAATCGCCATTTTCGACTTCGTCCTAAGGCTAGGAGCCGTGGT TGCTGCTCTGGCTGCTGCTGGTACAATGGGCAGCAGTGAGCAAACCCTCCCCTTCTTCACTCAGTTCTTCCAGTTCCAGGCCAGTTACGACGACCTCCCT ACCTTCCAATTCTTTGTGATCGCAATGGCAATCGTGGGAGGCTACTTGGTTCTGTCTCTCCCGTTCTCAATCGTCCTCATCATCCGCCCACAAGCCGTGG CTCCGAGGCTGCTCCTCGTTCTACTTGACACGGTGGCTCTGACTCTGAACACGTCAGCAGCTGGGGCAGCTGCGGCGATAGTGTACTTGGCGCACAACGG GAACTCGAGCGCCAACTGGCTCGCAATCTGCCAGCAGTTCGGCGACTTCTGTCAGAAAGTCAGCGGAGCAGTTGTGGCTTCGTTCGTGGCAGCTGTGGCC TTGATGTTCTTGGTTGTCCTCTCTGGCTTGGCTCTCCGAAGGCATTAG
AA sequence Show only first row Show all	>Lus10017008 pacid=23173026 polypeptide=Lus10017008 locus=Lus10017008.g ID=Lus10017008.BGIv1.0 annot-version=v1.0 MSTSIEMTEESSSVAKGKAPLITTTTYSHDDGHHAKGRIHRNNYKTAGGYKKGIAIFDFVLRLGAVVAALAAAGTMGSSEQTLPFFTQFFQFQASYDDLP TFQFFVIAMAIVGGYLVLSLPFSIVLIIRPQAVAPRLLLVLLDTVALTLNTSAAGAAAAIVYLAHNGNSSANWLAICQQFGDFCQKVSGAVVASFVAAVA LMFLVVLSGLALRRH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27370		CASP3	Casparian strip membrane domai...		Lus10017008 [exp]	0	1
AT5G14340	MYB	AtMYB40	myb domain protein 40 (.1)		Lus10032117 [exp]	1.0	0.9499
AT4G34770			SAUR-like auxin-responsive pro...		Lus10012183 [exp]	1.7	0.9374
AT2G36100		CASP1	Casparian strip membrane domai...		Lus10021332 [exp]	3.2	0.9445
AT5G47450		ATTIP2;3, DELTA...	DELTA-TONOPLAST INTRINSIC PROT...		Lus10007796 [exp]	4.0	0.9369
AT4G01470		ATTIP1.3, GAMMA...	tonoplast intrinsic protein 1;...		Lus10040863 [exp]	4.2	0.9272
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10023855 [exp]	4.8	0.8961
AT5G04220		SYT3, NTMCTYPE1...	synaptotagmin 3, Calcium-depen...		Lus10026515 [exp]	5.2	0.9186
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10005078 [exp]	5.5	0.9173
AT5G47450		ATTIP2;3, DELTA...	DELTA-TONOPLAST INTRINSIC PROT...		Lus10004733 [exp]	6.3	0.9217
AT2G21100			Disease resistance-responsive ...		Lus10034479 [exp]	8.1	0.9291

Compare expression of checked genes

Lus10017008 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.