Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11540 1351 / 0 SPY SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G22350 271 / 2e-80 ELM1 ELONGATED MITOCHONDRIA 1, Protein of unknown function (DUF1022) (.1) AT3G04240 283 / 3e-79 SEC secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G06180 254 / 2e-74 Protein of unknown function (DUF1022) (.1), Protein of unknown function (DUF1022) (.2) AT5G06200 185 / 3e-53 CASP4 Casparian strip membrane domain protein 4, Uncharacterised protein family (UPF0497) (.1) AT3G11550 181 / 1e-51 CASP2 Casparian strip membrane domain protein 2, Uncharacterised protein family (UPF0497) (.1) AT2G36100 165 / 3e-46 CASP1 Casparian strip membrane domain protein 1, Uncharacterised protein family (UPF0497) (.1) AT2G27370 134 / 3e-35 CASP3 Casparian strip membrane domain protein 3, Uncharacterised protein family (UPF0497) (.1) AT5G15290 115 / 5e-29 CASP5 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1) AT1G14160 107 / 4e-26 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021336 [exp] 1680 / 0 AT3G11540 1509 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10021333 [exp] 268 / 2e-82 AT3G11550 246 / 1e-83 Casparian strip membrane domain protein 2, Uncharacterised protein family (UPF0497) (.1) Lus10013300 [exp] 273 / 1e-80 AT5G22350 626 / 0.0 ELONGATED MITOCHONDRIA 1, Protein of unknown function (DUF1022) (.1) Lus10005191 [exp] 271 / 2e-80 AT5G22350 626 / 0.0 ELONGATED MITOCHONDRIA 1, Protein of unknown function (DUF1022) (.1) Lus10003576 [exp] 268 / 5e-74 AT3G04240 1606 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029409 [exp] 209 / 2e-61 AT3G11550 234 / 9e-79 Casparian strip membrane domain protein 2, Uncharacterised protein family (UPF0497) (.1) Lus10004205 [exp] 208 / 4e-61 AT3G11550 232 / 8e-78 Casparian strip membrane domain protein 2, Uncharacterised protein family (UPF0497) (.1) Lus10003113 [exp] 227 / 9e-61 AT3G04240 1687 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004779 [exp] 226 / 2e-60 AT3G04240 1683 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G208900 [exp] 1434 / 0 AT3G11540 1506 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G075700 [exp] 1415 / 0 AT3G11540 1505 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G075500 [exp] 332 / 4e-102 AT5G22350 569 / 0.0 ELONGATED MITOCHONDRIA 1, Protein of unknown function (DUF1022) (.1) Potri.004G197000 [exp] 300 / 2e-90 AT5G22350 608 / 0.0 ELONGATED MITOCHONDRIA 1, Protein of unknown function (DUF1022) (.1) Potri.009G159900 [exp] 276 / 3e-82 AT5G22350 629 / 0.0 ELONGATED MITOCHONDRIA 1, Protein of unknown function (DUF1022) (.1) Potri.019G025600 [exp] 267 / 9e-74 AT3G04240 1689 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G051400 [exp] 261 / 7e-72 AT3G04240 1684 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G208800 [exp] 204 / 7e-60 AT5G06200 201 / 7e-66 Casparian strip membrane domain protein 4, Uncharacterised protein family (UPF0497) (.1) Potri.016G075400 [exp] 199 / 5e-58 AT5G06200 179 / 2e-57 Casparian strip membrane domain protein 4, Uncharacterised protein family (UPF0497) (.1) Potri.016G075300 [exp] 160 / 2e-44 AT5G06200 162 / 2e-50 Casparian strip membrane domain protein 4, Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [flax] [poplar] Marvel-like PF04535 [flax] [poplar] DUF588 Domain of unknown function (DUF588) CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat CL0113 [flax] [poplar] GT-B PF06258 [flax] [poplar] Mito_fiss_Elm1 Mitochondrial fission ELM1
Representative CDS sequence Show only first row Show all	>Lus10017009 pacid=23172973 polypeptide=Lus10017009 locus=Lus10017009.g ID=Lus10017009.BGIv1.0 annot-version=v1.0 ATGGCATTCCCTGAGGATGCTGTTGGTAATGGGAAAGAGGGGGAACCTGCCGCAGGAGATAATGGTTTCATTGAGCGTTCCGAATCTTCTCCTTGTACCA GTTGCAGTCCTGCTGCTGTGGCTTCTCTTCAGAAGCAGTTCCATGGGAAGGATGCCTTGAATTTTGCTAATATACTCCGATCCAGGAACAAGTTTGTTGA TGCTCTTACTCTTTATGAGAGGGTATTGGAGGAAGATAGTAGAGATGTGGAAGCTTATATCGGGAAAGGGATTTGTCTACAGATGCAGAACATGGGAAGG CTGCTTTCGACAGTTTTGCTGAAGCGGTCAGGATTGAACCGCAGAATGCATGTGCTCTCACTCACTGTGGCATTCTTTACAAAGATGAGGGTCGTTTGGT TGATGCTGCCGAGCCGTATGTCATATCAGAAGGCTCTAACGGCAGACCCTTCATATAAGCCAGCTGCTGAATGTCTAGCCATTGTGTTAACAGATCTTGG AACCAGCTTAAAACTTTCTGGCAATGTCCAAGAAGGAATCCAAAAGTACTATGAAGCTCTTAAGATAGACCCACACTATCCGGCTGCATATTACAATCTC GGTGTAGTGTATTCTGAAATGATGCAATATGACACTGCCCTTACTTGCTATGAAAAGGCGGCCCTGGAGAGGCCCATGTATGCAGAAGCATATTGCAACA TGGGTGTCATATACAAAAACCGTGGTGATTTGGAGTCTGCAATTGCCTGTTATGAGAGGTGTTTAGCCGTTTCACCTAATTTTGAGATTGCTAAAAATAA TATGGCAATAGCACTGACAGACTTGGGCACAAAGGTTAAACTGGAGGGAGACATCAATCAAGGTGTGATATATTACAAAAAGGCTTTATACTATAATTGG CACTATGCTGATGCTATGTACAACCTCGGTGTTGCTTATGGTGAGCTGCTGAAGTTTGATCAGGCAATTGTATTCTATGAACTTGCTTTCCACTTCAATC CTCATTGTGCTGAAGCTTGCAACAATTTGGGAGTAATATACAAGGATCGGGATAATCTTGATAAAGCAGTGGAGTGTTACCAGTTGGCTTTATCTATCAA ACCAAACTTTTCTCAGTCATTGAATAATCTTGGCGTTGTGTACACAGTCCAGGGAAAAATGGATGCAGCTGCAAGCATGATTGAGAAAGCTATCTTAGCT AATCCTACTTACGCTGAAGCATATAATAACCTAGGTGTCCTTTACAGAGATGCTGGAAATATATCTATGGCTATTACTGCATATGAGCAATGCCTGAAGA TAGATCCAGATTCTCGTAATGCTGGCCAGATGTGTGCTTTTGTCATCAATGGACATGAAACATATGCTGTTTCCAATAATTGCAGTCTTTTTTCCTGTCC TCTGGCTCTTTTTTACTTTCTCGCGGAAACTACTTCCGTCGCTATTGCATCATTAATGCTCCTGATTTGCATTCTTATGCAGAATCGGTTACTTGCTATG AACTATATACATGAGGGTCGGGATGATGAGCTATATGAGACACACAGAGACTGGGGTAGGCGCTTTTTGAGGCTGTACCCTCAATATACTTCCTGGGACA ACTCGAAGGAACCAGAAAGACCCCTCGCTCCCCTTGTCTACCATGACTATTCAAAGTTCAAGGTGGTTGTGTATTCAGCAGTTGTTAAGGCCGATGCAAA AACTAATAGATTCAGAGAGAAAGTGCTCAAAAAGGGTGGAATGTGGAGAGACATATATGGAATTGATGAAAAGAGGGTTGCCGGTTTGGTTAGAGATGAC AAAGTTGACATCTTAGTGGAACTCACTGGCCATACTGCTAACAATAAGTTGGGAACAATGGCTTGCCGACCAGCGCCTATTCAGGTTACATGGATAGGCT ATCCAAATACAACTGGTTTGCCTAGCATTGATTACAGAATCACCGATTCTCTGGCTGACCCTCCTGGCACAAAACAAAAGCATGTTGAGGAGTTAGTAAG GTTACCAGAGTCTTTTCTTTGTTACACTCCATCCCCAGAAGCCGGGCTAGTTTCTGCTTCCCCTGCTGTGTCTAATAGCTTTGTAACATTTGGCAGTTTT AACAATCTGGCAAAGATAACACCTAAAGTATTACAAGTTTGGGCTAGGATTCTGTGTGCAGTTCCAAACTCTCGCCTGGTCGTCAAATGCAAACCGTTCT GTTCCGATAGCGTTAGACAGAAATTTCTTACAACCTTGGAGCAGCTGGGATTGGAATCGTTGCGTGTTGATCTTCTGCCACTAATTCTCCTAAACCATGA TCATATGCAAGCATATTCTCTCATGGACATCAGTTTGGATACCTTCCCATATGCTGGAACGACGACAACCTGTGAATCATTGTTCATGGGAGTGCCATGC GTTACTATGGCGGGACCAGTACATGCCCACAATGTTGGTGTTAGTCTTCTCAGCAAAGTAGGGTTAGGACATTTGGTAGCCAAAAATGAAGATGAATACA TTCAACTGGCTGTAAACCTGGCTTCTGATGTTGATGCTCTTGTGAGGTTGAGAATGAGCCTTCGAGATCTTATGGCCAAGTCGCCACTATGCGACGGAGC CAACTTTATCCTTGGCTTGGAGTGCTCATACCGGGAAATGTGGCGGAGATACTGCATGGGAGATGTGCCATCTCTAAAACGCATAGAACTAATACAACAG CAGCAAGGTAATTCAGATGTACCGAGTGATAACTCTCAAGCGACAACTATCTCGAGTATCATAAGCTCAAGAGACGAATTGCATGGGTCTATTAAGGAGA ACGGATTTGCTGTTGTTGCTGCATCACCCGTGCGTGTGTTAAGGCCAACAGGAGGAATCAACAGCTGGCTTCATTGGCTTCCGCTCCCAGTACACAAGAG AGTTGACTGCCTTATCCGGCGAATCATTTTTGACGGCTTCGGAAGCCTTCCGTCAAAAATTTTACCTAGCACACACCGGATGACGCCATTTTTGTCTCCC AAAGCTGGACTGTCAGATATACTAGAAGCTGATGCCAATCGGATCGCAGAGATGGCTCGAGATTCATTTCACAGGGATGGGCCATTGTTGGTCGTTGCTT CTGGGAGGGACACCATTCCGGTTGCAAGTTCAATAAGACGGTTAGCTCCAGAAAATGTCTTTGTTGTACAGATACAGCATCCGAGATCGAATCTCAGTAG GTTTGATCTGGTGATTACTCCCCATCACGACTACTACCCGCTGACTCCTCATGGTCAGCAACAAGTCCCTTGGTTTCTTCGGAGGTGGATAACCCCAAGA GAGCCTCCTGATAGTCGTGTGATACTCACTGTTGGAGCTCTTCATCGAGCTGATTCTGCTGCGTTAAGGGCTGCTGCTTCTTTCTGGTATGAAGAGTTGC AGCCGTTACCAAAGCCTCTGCTTATTGTGAATATCGGTGGGCCCATAGGTAATTGTCGGTACGGTGCTGACCTTGCGATGCAGTTAACCGAGATGCTACA AAGTGTTCTTTGGAGTTGTGGAAGCGTTAGAATATCCTTCTCTCGAAGAACCCCTGAGAAGCACACTCTTCTTCTTCATAGGCAAAACATGTCGACCACC ATCGATGTCCCAGAGTCGAGCTCAGTAACCAAGGGGAAAGCACCTCTCATTGCACTAGCAAAGCATGGTAAGTCAGGTGGGTACCATAGAGGGGTAGCAA TATTTGACTTCATCCTCAGGATTGGCGCTGTAATATCTGCACTAGCAGCAGCTGCCACCATGGGGACTAGTGATGAAACCCTCCCTTTCTTCACCCAGTT CTTGCAGTTCCAAGCCAGCTACGACGATCTCCCTACTTTCCAGTTCTTCGTGATAGCCATGGGGATCGTTGGGGGCTACCTTGTCCTGTCCCTACCATTC TCCATTGTCTGCATTGTTCGTCCCCAGGCTGCTGCTCCACGCTTCCTCCTCCTCGTTCTCGACATTGTGGTACTGACGCTGAACACGGCAGCAGCATCTG CAGCGGCGGCCATTGTGTACTTGGCACACAACGGAAACAGCAACACAAACTGGCTAGCAATATGCAACCAGTTTGGTGACTTCTGCCAGAAAGTGAGCGG ATCTGTGGTGGCCGCATTTGTGACCGTGCTTATCTTCGTCATCCTCGTCATCCTCTCTGCTGTTGCTCTCAGGAGGCACTAG
AA sequence Show only first row Show all	>Lus10017009 pacid=23172973 polypeptide=Lus10017009 locus=Lus10017009.g ID=Lus10017009.BGIv1.0 annot-version=v1.0 MAFPEDAVGNGKEGEPAAGDNGFIERSESSPCTSCSPAAVASLQKQFHGKDALNFANILRSRNKFVDALTLYERVLEEDSRDVEAYIGKGICLQMQNMGR LLSTVLLKRSGLNRRMHVLSLTVAFFTKMRVVWLMLPSRMSYQKALTADPSYKPAAECLAIVLTDLGTSLKLSGNVQEGIQKYYEALKIDPHYPAAYYNL GVVYSEMMQYDTALTCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVIYYKKALYYNW HYADAMYNLGVAYGELLKFDQAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQLALSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAILA NPTYAEAYNNLGVLYRDAGNISMAITAYEQCLKIDPDSRNAGQMCAFVINGHETYAVSNNCSLFSCPLALFYFLAETTSVAIASLMLLICILMQNRLLAM NYIHEGRDDELYETHRDWGRRFLRLYPQYTSWDNSKEPERPLAPLVYHDYSKFKVVVYSAVVKADAKTNRFREKVLKKGGMWRDIYGIDEKRVAGLVRDD KVDILVELTGHTANNKLGTMACRPAPIQVTWIGYPNTTGLPSIDYRITDSLADPPGTKQKHVEELVRLPESFLCYTPSPEAGLVSASPAVSNSFVTFGSF NNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCSDSVRQKFLTTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLFMGVPC VTMAGPVHAHNVGVSLLSKVGLGHLVAKNEDEYIQLAVNLASDVDALVRLRMSLRDLMAKSPLCDGANFILGLECSYREMWRRYCMGDVPSLKRIELIQQ QQGNSDVPSDNSQATTISSIISSRDELHGSIKENGFAVVAASPVRVLRPTGGINSWLHWLPLPVHKRVDCLIRRIIFDGFGSLPSKILPSTHRMTPFLSP KAGLSDILEADANRIAEMARDSFHRDGPLLVVASGRDTIPVASSIRRLAPENVFVVQIQHPRSNLSRFDLVITPHHDYYPLTPHGQQQVPWFLRRWITPR EPPDSRVILTVGALHRADSAALRAAASFWYEELQPLPKPLLIVNIGGPIGNCRYGADLAMQLTEMLQSVLWSCGSVRISFSRRTPEKHTLLLHRQNMSTT IDVPESSSVTKGKAPLIALAKHGKSGGYHRGVAIFDFILRIGAVISALAAAATMGTSDETLPFFTQFLQFQASYDDLPTFQFFVIAMGIVGGYLVLSLPF SIVCIVRPQAAAPRFLLLVLDIVVLTLNTAAASAAAAIVYLAHNGNSNTNWLAICNQFGDFCQKVSGSVVAAFVTVLIFVILVILSAVALRRH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11540		SPY	SPINDLY, Tetratricopeptide rep...		Lus10017009 [exp]	0	1
AT2G46700		ATCRK3	CDPK-related kinase 3 (.1.2)		Lus10009078 [exp]	2.0	0.8841
AT4G35780		STY17	serine/threonine/tyrosine kina...		Lus10041845 [exp]	10.5	0.9023
AT5G27950			P-loop containing nucleoside t...		Lus10018999 [exp]	16.1	0.8386
AT3G50620			P-loop containing nucleoside t...		Lus10002971 [exp]	16.2	0.8349
AT3G11550		CASP2	Casparian strip membrane domai...		Lus10021333 [exp]	16.8	0.8971
AT2G46270	bZIP	GBF3	G-box binding factor 3 (.1.2)		Lus10005146 [exp]	18.7	0.8281
AT5G11310			Pentatricopeptide repeat (PPR)...		Lus10013139 [exp]	20.8	0.8629
AT5G19730			Pectin lyase-like superfamily ...		Lus10028364 [exp]	22.1	0.8909
AT4G11790			Pleckstrin homology (PH) domai...		Lus10006338 [exp]	26.2	0.8386
AT2G46290			Transducin/WD40 repeat-like su...		Lus10010332 [exp]	29.4	0.8075

Compare expression of checked genes

Lus10017009 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.