Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36130 251 / 2e-86 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G44600 146 / 5e-41 AtCYP71, CYP71 cyclophilin 71, cyclophilin71 (.1) AT5G67530 138 / 2e-38 ATPUB49 plant U-box 49 (.1) AT1G01940 129 / 4e-38 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G33060 119 / 9e-32 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G13120 108 / 3e-29 Pnsl5, ATCYP20-2 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) AT3G62030 107 / 1e-28 CYP20-3, ROC4 cyclophilin 20-3, rotamase CYP 4 (.1.2.3) AT2G38730 105 / 2e-28 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT2G29960 102 / 2e-27 CYP19-4, ATCYP5, CYP5 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) AT5G58710 102 / 2e-27 ROC7 rotamase CYP 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021335 [exp] 294 / 3e-103 AT2G36130 286 / 1e-100 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10006271 [exp] 146 / 6e-41 AT3G44600 1110 / 0.0 cyclophilin 71, cyclophilin71 (.1) Lus10020573 [exp] 146 / 6e-41 AT3G44600 1115 / 0.0 cyclophilin 71, cyclophilin71 (.1) Lus10007794 [exp] 129 / 1e-34 AT5G67530 868 / 0.0 plant U-box 49 (.1) Lus10009237 [exp] 121 / 1e-34 AT1G01940 317 / 2e-112 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10004731 [exp] 126 / 7e-34 AT5G67530 916 / 0.0 plant U-box 49 (.1) Lus10024999 [exp] 115 / 9e-30 AT4G33060 344 / 9e-112 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10020992 [exp] 110 / 8e-29 AT2G15790 598 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Lus10023860 [exp] 110 / 8e-29 AT2G15790 599 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G075600 [exp] 263 / 6e-91 AT2G36130 278 / 3e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.009G146400 [exp] 145 / 1e-40 AT3G44600 1095 / 0.0 cyclophilin 71, cyclophilin71 (.1) Potri.002G149700 [exp] 127 / 2e-37 AT1G01940 293 / 3e-103 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.014G071600 [exp] 124 / 4e-36 AT1G01940 293 / 2e-103 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.005G148900 [exp] 130 / 3e-35 AT5G67530 806 / 0.0 plant U-box 49 (.1) Potri.003G167700 [exp] 114 / 2e-31 AT5G13120 277 / 5e-94 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Potri.002G185200 [exp] 112 / 2e-30 AT3G62030 293 / 2e-100 cyclophilin 20-3, rotamase CYP 4 (.1.2.3) Potri.001G060200 [exp] 111 / 3e-30 AT5G13120 297 / 7e-102 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Potri.003G194500 [exp] 105 / 8e-29 AT2G38730 349 / 2e-124 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.001G030000 [exp] 104 / 3e-28 AT2G38730 348 / 5e-124 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [flax] [poplar] Cyclophil-like PF00160 [flax] [poplar] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Lus10017010 pacid=23173014 polypeptide=Lus10017010 locus=Lus10017010.g ID=Lus10017010.BGIv1.0 annot-version=v1.0 ATGTGGAAAGCCGCCGATGGAGGAGCACCTGAGGTGACTCTGGAGACTTCCATGGGAGCTTTCACCGTTGAGGTATCGAAATTTTTCACTCGTAACTCTC TTTTCGTTATTTTACCTCTGTTTGGCACTGGCGTGACGAGGAGTGTTAATTTGCAGTTGTACTACAAGCACGCTCCAAAGACTTGCAGGAACTTCATTGA GCTGTCCAGGAGAGGATACTACGACAATGTGAAATTCCACCGGATTATCAAGGATTTCATAGTGCAAGGTGGGGATCCGACGGGGACAGGAAGAGGTGGA GAGTCTATATTCGGAAAGAAGTTTGAGGACGAGATAAAGAAGGAGTTGAAGCACACTGGGGCTGGGATTCTATCCATGGCAAATGCTGGTCCTGATACAA ATGGAAGCCAGTTCTTCATTACATTGGCGCCATGCCTTTCACTAGATGGGAAACATACTATTTTCGGAAGAGTATGCACAGGGATGGAGATAATCAAAAG ACTTGGGAGCGTCCAAACTGATAACAGTGACAGGCCCATTCATGACGTGAAGATACTAAGGACGTCTGTCAAAGATTAA
AA sequence Show only first row Show all	>Lus10017010 pacid=23173014 polypeptide=Lus10017010 locus=Lus10017010.g ID=Lus10017010.BGIv1.0 annot-version=v1.0 MWKAADGGAPEVTLETSMGAFTVEVSKFFTRNSLFVILPLFGTGVTRSVNLQLYYKHAPKTCRNFIELSRRGYYDNVKFHRIIKDFIVQGGDPTGTGRGG ESIFGKKFEDEIKKELKHTGAGILSMANAGPDTNGSQFFITLAPCLSLDGKHTIFGRVCTGMEIIKRLGSVQTDNSDRPIHDVKILRTSVKD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36130			Cyclophilin-like peptidyl-prol...		Lus10017010 [exp]	0	1
AT1G03330			Small nuclear ribonucleoprotei...		Lus10029641 [exp]	1.0	0.9435
AT5G05210			Surfeit locus protein 6 (.1.2)		Lus10023712 [exp]	2.0	0.9412
AT1G61620			phosphoinositide binding (.1)		Lus10002584 [exp]	2.0	0.9214
AT5G13340			unknown protein		Lus10035960 [exp]	2.4	0.9259
AT5G64180			unknown protein		Lus10008120 [exp]	3.5	0.8859
AT4G32930			unknown protein		Lus10005503 [exp]	4.9	0.9083
AT1G23750			Nucleic acid-binding, OB-fold-...		Lus10029155 [exp]	5.3	0.8793
AT4G27380			unknown protein		Lus10037879 [exp]	7.5	0.8600
AT3G59470	FAR1_related		Far-red impaired responsive (F...		Lus10026854 [exp]	7.6	0.8599
AT1G03330			Small nuclear ribonucleoprotei...		Lus10042686 [exp]	7.9	0.8993

Compare expression of checked genes

Lus10017010 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.