Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47960 112 / 4e-31 ATC/VIF1, C/VIF1 cell wall / vacuolar inhibitor of fructosidase 1 (.1) AT3G17140 69 / 2e-15 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G64620 42 / 7e-05 ATC/VIF2, C/VIF2 cell wall / vacuolar inhibitor of fructosidase 2 (.1) AT1G56100 39 / 0.0007 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1.2.3) AT5G46940 39 / 0.0007 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016318 [exp] 219 / 1e-73 AT1G47960 115 / 2e-32 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10017040 [exp] 191 / 1e-62 AT1G47960 92 / 3e-23 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10027947 [exp] 123 / 9e-36 AT1G47960 111 / 1e-30 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10000822 [exp] 123 / 9e-36 AT1G47960 113 / 1e-31 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10016317 [exp] 122 / 4e-35 AT1G47960 115 / 2e-32 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10037792 [exp] 117 / 2e-33 AT1G47960 91 / 1e-22 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10017076 [exp] 111 / 3e-31 AT1G47960 88 / 9e-22 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10021338 [exp] 97 / 2e-26 AT1G47960 59 / 3e-12 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10017014 [exp] 83 / 3e-21 AT1G47960 56 / 4e-11 cell wall / vacuolar inhibitor of fructosidase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G063000 [exp] 115 / 6e-33 AT1G47960 137 / 3e-41 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Potri.009G083500 [exp] 84 / 2e-20 AT1G47960 114 / 7e-32 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Potri.008G102600 [exp] 66 / 8e-14 AT3G17130 153 / 1e-47 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.006G134900 [exp] 58 / 1e-10 AT5G64620 76 / 2e-17 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.001G288500 [exp] 56 / 2e-10 AT1G47960 59 / 1e-11 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Potri.007G108301 [exp] 51 / 4e-08 AT5G64620 163 / 1e-51 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.010G209800 [exp] 47 / 1e-06 AT5G64620 93 / 5e-24 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.001G127500 [exp] 44 / 9e-06 AT4G02250 98 / 3e-26 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.013G012800 [exp] 42 / 3e-05 ND / Potri.001G109700 [exp] 39 / 0.0006 AT1G47960 46 / 2e-06 cell wall / vacuolar inhibitor of fructosidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10017013 pacid=23172948 polypeptide=Lus10017013 locus=Lus10017013.g ID=Lus10017013.BGIv1.0 annot-version=v1.0 ATGGCAACAGTATTGCCGACTAAACTCGCTACCCTCGCCTCTGTTTTCCTTGTGGTGGTCCTCCTGTCCCATAACATGATATCACCAACAAGAGCAGACA AGGATCTGATCCTGAGAACTTGTAAGAATACCCAATTCTTCAATGTTTGCGTCTCGGCGTTGCTTGAAGACTCTCGTGGACTCAAGGCCAACGACGTGAC TTCGCTGGCTTTGATATTGATCGACGTCGTACAGGCAAAAGGGATGGTGGTCTACAAGGAGATAAAGCAATTGCAGATGACCAACCCAGAACTGAAGAAG CCGCTCCAGGATTGTGCTGATGATTACCATATAGTGCTTCACGAGGATCATGACGTGGCAGTGGAAGCGGTGAGTAAAGGGGATCCCAAATTTGGAGAGG ACGCAATGAGTGACGCTCGAGGTGAGGCACAAAACTGCGAGGGTTCGTTCAAAAACTATGATAAAAAATCCCCCTTAACCCAACTCAACTATGATGTATA TGAGATCGCCAGCGTAACCTGGGCCGTTATCCGAACGCTCGAATGA
AA sequence Show only first row Show all	>Lus10017013 pacid=23172948 polypeptide=Lus10017013 locus=Lus10017013.g ID=Lus10017013.BGIv1.0 annot-version=v1.0 MATVLPTKLATLASVFLVVVLLSHNMISPTRADKDLILRTCKNTQFFNVCVSALLEDSRGLKANDVTSLALILIDVVQAKGMVVYKEIKQLQMTNPELKK PLQDCADDYHIVLHEDHDVAVEAVSKGDPKFGEDAMSDARGEAQNCEGSFKNYDKKSPLTQLNYDVYEIASVTWAVIRTLE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10017013 [exp]	0	1
AT5G53420			CCT motif family protein (.1.2...		Lus10019027 [exp]	7.2	0.8873
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10025819 [exp]	11.1	0.8822
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Lus10016815 [exp]	13.0	0.8754
AT4G24910			Protein of unknown function (D...		Lus10002345 [exp]	16.0	0.8841
AT3G63440		ATCKX6, CKX6, A...	CYTOKININ OXIDASE 6, cytokinin...		Lus10005317 [exp]	18.4	0.8692
AT1G53920		GLIP5	GDSL-motif lipase 5 (.1)		Lus10013185 [exp]	19.3	0.8580
					Lus10011339 [exp]	22.0	0.8566
AT4G24910			Protein of unknown function (D...		Lus10003160 [exp]	25.0	0.8763
AT1G18590		SOT17, ATSOT17,...	ARABIDOPSIS SULFOTRANSFERASE 5...		Lus10017878 [exp]	25.5	0.8541
AT2G04480			unknown protein		Lus10032584 [exp]	25.6	0.8727

Compare expression of checked genes

Lus10017013 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.