Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36190 683 / 0 ATCWINV4 cell wall invertase 4 (.1) AT3G52600 671 / 0 ATCWINV2 cell wall invertase 2 (.1.2) AT3G13790 590 / 0 ATCWINV1, ATBFRUCT1 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) AT1G55120 566 / 0 ATFRUCT5, ATCWINV3 6-fructan exohydrolase, beta-fructofuranosidase 5 (.1.2.3) AT3G13784 549 / 0 ATCWINV5 cell wall invertase 5 (.1) AT5G11920 475 / 1e-161 ATCWINV6 6-&1-fructan exohydrolase (.1.2) AT1G12240 452 / 5e-151 ATBETAFRUCT4, VAC-INV VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) AT1G62660 448 / 1e-149 Glycosyl hydrolases family 32 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021339 [exp] 1088 / 0 AT2G36190 691 / 0.0 cell wall invertase 4 (.1) Lus10014219 [exp] 892 / 0 AT2G36190 711 / 0.0 cell wall invertase 4 (.1) Lus10014217 [exp] 881 / 0 AT2G36190 688 / 0.0 cell wall invertase 4 (.1) Lus10008392 [exp] 581 / 0 AT3G13790 756 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10015614 [exp] 565 / 0 AT3G13790 658 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10037632 [exp] 553 / 0 AT3G13790 648 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10001529 [exp] 549 / 0 AT3G13790 598 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10015613 [exp] 537 / 0 AT3G13790 641 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10037631 [exp] 536 / 0 AT3G13790 633 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G077400 [exp] 766 / 0 AT3G52600 755 / 0.0 cell wall invertase 2 (.1.2) Potri.006G210600 [exp] 761 / 0 AT3G52600 770 / 0.0 cell wall invertase 2 (.1.2) Potri.016G077500 [exp] 749 / 0 AT3G52600 751 / 0.0 cell wall invertase 2 (.1.2) Potri.006G227400 [exp] 546 / 0 AT3G13790 703 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Potri.006G227500 [exp] 529 / 0 AT3G13790 660 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Potri.003G112600 [exp] 467 / 7e-157 AT1G12240 882 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Potri.003G126300 [exp] 463 / 1e-155 AT1G12240 819 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Potri.015G127100 [exp] 427 / 6e-142 AT1G62660 712 / 0.0 Glycosyl hydrolases family 32 protein (.1) Potri.002G007300 [exp] 59 / 8e-09 AT4G29360 339 / 1e-111 O-Glycosyl hydrolases family 17 protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF08244 [flax] [poplar] Glyco_hydro_32C Glycosyl hydrolases family 32 C terminal CL0143 [flax] [poplar] B_Fructosidase PF00251 [flax] [poplar] Glyco_hydro_32N Glycosyl hydrolases family 32 N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10017015 pacid=23173031 polypeptide=Lus10017015 locus=Lus10017015.g ID=Lus10017015.BGIv1.0 annot-version=v1.0 ATGTGGTCGAGATCGGTGATGAGGTACTCGTTGCCGACGGCAGCGGCGACGACAGAGGTGGCGAGGAGGAAAGGGAGGATTCGGGAGGAGAGCCAGCGGT CAGTAGAGGGAATGTCGACGGATAGGTTGGCGAGGCGGTTGTTTTCGACGGCGACGATGAAGTCGATGCCGGTGTTGGAGAAGGCAGAGAGGATATTGGG CGGCGATCATTCTCGCCGGCGACNNNNNNNNNNNATCATTCTCGCCGGCGACGTTGCCGAAGGTTCCCACATAGTGTACTCGGAGTTGCAATCGGTCGCT GTCGAGAACGTCGACGCTACTCACCGAACTGCCTATCATTTCCAGCCTCCCAAACACTGGATCAACGGCCCAATGTACTACAACGGCTTCTACCATCTCT TCTACCAGTATAACCCGAAAGGTGCTGTCTGGGGAAACATCGTATGGGCCCACTCAGTATCCAGAGACCTCGTTAACTGGGTCGCCCTCGAGCCCGCAAT CGAGGCTACTAAGCCTTTTGACATCGGAGGTTGCTGGTCTGGATCCGCTACTATCCTCCCCAACAACAAGCCCATTTTAATGTACACTGGGCTCGACAAG AACAAGCGCCAGCTCCAAAACTTCGCCGTTCCCAAAAATGCCTCCGACCCGTTCCTCCGCGAGTGGGTCAAGCCCGACTTCGGCAATCCGTTCATTAATC CAGACCCTTTGGTCAATGCCAGCGCCTTTCGGGACCCGACCACCGCGTGGTTTGCCAACGGGAAGTGGAACACCGTGGTTGGTGGCGTTTACGACATGTT GGGGATCGGGTTTCTCTACCAGAGTAAGGATTTTAAGAAGTGGGTCAAGACGGATCACCCGCTCCATGCGGTTTGGGGAACCGGTATGTGGGAGTGCCCC GATTTCTTCCCTGTGTCTGTCGGCGGTGAAGAGGGTGGGTCGGACACTTATGCGGCGGGGGATGGTGTGAAATACGTTTTCAAGGTGAGCTTGGATTTGG CGAGGTTCGAGTACTACACAATTGGAGTTTATGACAAAGAAAAGAACAAATATGTTCCAGATGAAGGATCGGTTGACAGTTGGGCTGGGCTAAGATACGA CTATGGAAATTTCTACGCATCAAAGTCGTTCTTCGATCATAAGAAAAACCGTAGGATATTGTGGGGTTGGGCAAATGAATCTGATAGCGAGGATCAAGAT AAGGCTAAGGGTTGGGCTGGAATTCAGTTGATCCCAAGGAAAGTTTGGTTGGACCCAAGTGGGAAACAACTCTTACAATGGCCAATTGAAGAGTTGGAGA GGTTGAGAAATACCCACCCAGTTCGGTTGAACCATAAGCAACTCAAGAAAGGAAAACTGGTTCGGGTTGATCGAATCAACGCTGCTCAGGTTGACGTGGA GGTCACCTTCTCGTTCAAATCCCTTGACAAAGCAGAACTCTTCGATCCAAAATGGGCTGACCTCCCGGCCCAAGACGTGTGTAATGTAAGAAGGTCAAGT GTCCAAGGTGGGCTTGGGCCATTTGGGCTTCTAACATTAGCCTCAAGTAAGCTGGAGGAATACACCCCGGTCATGTTCAGAGTGTTCAAGAGAGGCCATA ATAATAAACACGTCGTGCTGTTCTGCTCTGATGCTTCAAGCTCTACCCTATCCAGAGATCCGAAGATGTACAAGCCATCGTTCGCAGGATATGTGAACGT TGATTTGTCCCAAAACAGGAAGATCTCCGTCAGAAGCTTGATCGATCACTCGGTGGTGGAGAGCTTTGCACAAGGGGGGAAGACAGTGATAACTTCAAGG GTCTATCCGACTCTGGCGATCCAAGGCAGAGCTCATTTGTTCTTGTTCAACAATGGGACGGAGGAGATCAAGGTGGAAAAGCTTACGGCCTGGAACGTTA GGAAGCCGGTGATGAACGTGCCTCTGGAAGAAGCAGTTATCAAGAAATTCGTCTAA
AA sequence Show only first row Show all	>Lus10017015 pacid=23173031 polypeptide=Lus10017015 locus=Lus10017015.g ID=Lus10017015.BGIv1.0 annot-version=v1.0 MWSRSVMRYSLPTAAATTEVARRKGRIREESQRSVEGMSTDRLARRLFSTATMKSMPVLEKAERILGGDHSRRRXXXXIILAGDVAEGSHIVYSELQSVA VENVDATHRTAYHFQPPKHWINGPMYYNGFYHLFYQYNPKGAVWGNIVWAHSVSRDLVNWVALEPAIEATKPFDIGGCWSGSATILPNNKPILMYTGLDK NKRQLQNFAVPKNASDPFLREWVKPDFGNPFINPDPLVNASAFRDPTTAWFANGKWNTVVGGVYDMLGIGFLYQSKDFKKWVKTDHPLHAVWGTGMWECP DFFPVSVGGEEGGSDTYAAGDGVKYVFKVSLDLARFEYYTIGVYDKEKNKYVPDEGSVDSWAGLRYDYGNFYASKSFFDHKKNRRILWGWANESDSEDQD KAKGWAGIQLIPRKVWLDPSGKQLLQWPIEELERLRNTHPVRLNHKQLKKGKLVRVDRINAAQVDVEVTFSFKSLDKAELFDPKWADLPAQDVCNVRRSS VQGGLGPFGLLTLASSKLEEYTPVMFRVFKRGHNNKHVVLFCSDASSSTLSRDPKMYKPSFAGYVNVDLSQNRKISVRSLIDHSVVESFAQGGKTVITSR VYPTLAIQGRAHLFLFNNGTEEIKVEKLTAWNVRKPVMNVPLEEAVIKKFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36190		ATCWINV4	cell wall invertase 4 (.1)		Lus10017015 [exp]	0	1
					Lus10000529 [exp]	2.2	1.0000
					Lus10005514 [exp]	4.5	1.0000
AT5G05070			DHHC-type zinc finger family p...		Lus10027274 [exp]	4.6	1.0000
AT2G04865			Aminotransferase-like, plant m...		Lus10014633 [exp]	5.0	1.0000
AT1G28300	B3	LEC2	LEAFY COTYLEDON 2, AP2/B3-like...		Lus10014005 [exp]	5.3	1.0000
					Lus10033763 [exp]	5.9	0.7689
					Lus10008001 [exp]	6.3	1.0000
AT3G02960			Heavy metal transport/detoxifi...		Lus10015762 [exp]	6.5	1.0000
AT3G60730			Plant invertase/pectin methyle...		Lus10015877 [exp]	7.9	1.0000
AT2G30710			Ypt/Rab-GAP domain of gyp1p su...		Lus10025585 [exp]	8.1	0.9739

Compare expression of checked genes

Lus10017015 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.