Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36200 1353 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G28620 778 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G45850 776 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G37420 673 / 0 ATP binding microtubule motor family protein (.1) AT3G17360 234 / 5e-63 POK1 phragmoplast orienting kinesin 1 (.1) AT5G60930 232 / 1e-62 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G47820 229 / 3e-62 FRA1 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G59540 226 / 5e-62 ZCF125 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G19050 229 / 2e-61 POK2 phragmoplast orienting kinesin 2 (.1) AT3G12020 224 / 1e-60 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021340 [exp] 1899 / 0 AT2G36200 1499 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10014216 [exp] 1610 / 0 AT2G36200 1464 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10018120 [exp] 770 / 0 AT3G45850 1583 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10036146 [exp] 767 / 0 AT3G45850 1566 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10024429 [exp] 646 / 0 AT2G37420 1266 / 0.0 ATP binding microtubule motor family protein (.1) Lus10025304 [exp] 637 / 0 AT2G37420 1244 / 0.0 ATP binding microtubule motor family protein (.1) Lus10009073 [exp] 604 / 0 AT3G45850 1019 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10025275 [exp] 569 / 0 AT3G45850 981 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10022694 [exp] 533 / 2e-180 AT2G36200 394 / 3e-127 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G077800 [exp] 1454 / 0 AT2G36200 1476 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G210700 [exp] 1447 / 0 AT2G36200 1442 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G233700 [exp] 765 / 0 AT3G45850 1554 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.009G026000 [exp] 749 / 0 AT3G45850 1520 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G082900 [exp] 667 / 0 AT2G37420 1219 / 0.0 ATP binding microtubule motor family protein (.1) Potri.016G082400 [exp] 630 / 0 AT3G45850 1107 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.005G150800 [exp] 237 / 4e-64 AT5G60930 1386 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G145800 [exp] 233 / 2e-62 AT3G19050 1765 / 0.0 phragmoplast orienting kinesin 2 (.1) Potri.002G106000 [exp] 232 / 2e-62 AT5G60930 1524 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G046700 [exp] 225 / 9e-61 AT5G47820 1422 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Lus10017016 pacid=23172949 polypeptide=Lus10017016 locus=Lus10017016.g ID=Lus10017016.BGIv1.0 annot-version=v1.0 ATGTCTGGCCGGCACGAAAAAGAGAAGGGCGTTAATGTTCAGGTGCTGCTTCGTTGCAGGCCGTTTAGTGACGACGAGTTGAGGAACCATGCGCCACAGG TGGTCACTTGCAATGACTACCAGAGGGAAGTAGCCGTCTCACAGAATATCGCCGGGAAACAAATCGATCGAGTTTTCACATTCGACAAGGTCTTTGGTCC TACAGCGCAGCAAAGAGACCTCTATGAACAAGCAGTAGTACCAATCGTACATGAAGTATTGGAAGGATTCAACTGTACCATTTTTGCATATGGTCAAACG GGTACTGGAAAAACGTATACAATGGAAGGAGAATGCAAGAGAGCAAAGAGTGGTCCTAATGGAGAACTACCTCAAGAAGCGGGAGTTATTCCTAGAGCCG TCAAGCAGATATTTGACACGCTCGAAGGCCAGAATGCCGAATACAGTGTCAAAGTTACTTTTTTGGAGTTGTACAATGAGGAAATCACTGATTTACTTGC CCCAGAAGAAATTTCTAAGATATCTGTAGATGAAAAGCAAAAGAAGCAGCTGCCGCTTATGGAGGATGGGAAGGGCGGAGTCCTTGTTAGAGGTCTTGAG GAAGAGATAGTGGCAAGCGCCAGTGAGATATTCACTCTCCTTGAGAGAGGTTCGGCAAAACGTCGAACGGCTGAGACTTTGTTAAACAAGCAATCCAGTC GTTCGCATTCTCTGTTTTCCATTACAATCCACATCAAAGAAGCCACTCCAGAAGGCGAGGAACTAATCAAGTGCGGGAAATTGAATCTAGTCGATCTTGC TGGCTCAGAAAATATATCTCGTTCTGGTGCCAGGGAGGGCCGTGCAAGAGAAGCTGGTGAAATCAACAAAAGTTTGCTTACACTGGGTAGGGTGATTAAT GCTCTTGTGGAGCATCTTGGCCATATTCCATACAGGGATAGCAAGCTAACAAGATTACTTCGAGATTCTCTCGGAGGAAGAACCAAAACATGTATCATCG CTACTGTTTCCCCAGCTGTACATTGCTTGGAGGAAACATTGAGTACGCTTGATTATGCACACCGTGCCAAGCATATAAGGAATAAGCCTGAGAGGTTTAT GCAACACGTGAAAAGAACGGTGTATATATTCCGAAGGAACGATACTATCAGGAGGAAGCTGAAAGGAAGTAGTATGAATCAGCCATTATATTGCTGTGCT GTTTATGTGCAGGCTATGGCTGATCAGATAGAACAAATGGGAGTCACGATAGAAACTCACCAGAAGCAATTTGAGGAATTGCAAGAGAGATATCATATAC AAGTTAGGCACTGTAACGATTTAAGTAGCAAACTCGCACATACAGAGAGAAACTTGCATGAAACAAGCAAATTGCTTGCTAACACTGAGGAAGAACTGAA AAAGTGTCGCTATGCATTGAACGAAAGGGAATTTGTCATATCTGAACAGAGAAAAGCTGAAAGCGCATTGACTCAGCAGGCATGTGTGTTGCGGTCTGAT TTAGAAAAAGCTCTGAAAGACAATGCTTCTTTGTTCGAAAAGATTGGTAGAGAAGATAAACTGCAATCTGAGAATAGATCATTAGTTGATAGATTCCAGG CTGAGCTCTCTCAACAGATAGGTTGTCTGCGTAGCGTAGTTTCAAAATCTACGTCTCAGCAAGATGAGCATCTGCAGTGTGCTGGTAACCTGTGTCATTC TTTTTTGCAGACGCATGATAAGGCTGTCAAAGATATGAAGAGGAAACTGAAAAATACAAGGGTGCTCTACACTTCTCACATTGAAGCTTTGCAAAATGTG GTTCACTTGCACAAGGCGAGTTCTACTGCTGGCCTGGAAGAGATCTCAACTTTGGCTTCTTCTGATGCAAAGTCTATTGAAGATTATTTAGCTTCAGAGG GTGTTGAAGCCGCTTCAATATTCGATGATCTTGGGAATGCTCTTTCAACCCACCAAGGGGAAATGGCTGTTTTTGCAGGCGAGCTACGTCAGAGATTCAA TTCGAGTTGTGAGCAAACAAAACAAATCTCAGATTACACAGATGGATTCCTTTGCAAACTTCTGCAACAGTCCAAAACTCTCCAAAATCTTGTGATAGAA GCGGACAACTTCCAAATGAATAGTATTGCTGATTTCCAGAAAGCTTACGAGGAACAATCAAAATCTGATGCTGAGAAGCTTGTTGCCGATATCAGCAATC TTGTTTCTCATCACATTCTACGGCAAAAAGAACTGGTGAATGCAAGGCTTGATGGGTTTAGAGAAGCTGCTGTTGGAAGCAAGACGTTTTTGGACGGACA AGTTTCTTCACTTGACAGTATGACCACTGAAGCAAAACGGAAATGGCAAGAATATTGTGTGCAAGCGGAGAGTGATGCTAAGGATGGTACAGATTATTCA GCTGCGAAACACAGTCGTATGGAGACCCTCCTGCAGCAAAGTGTAAGCAATGCCGAAACAGTTTTCCAGCACTGCAAAAAGACCCGTGAATCTGTGAACG ACATGTGCTCAAAGCATGTCTCATCTTTGGCAACGCTTGTCAGAGATGCATGTGATAGTCATGACCAACATGATGCTGAAATCGATTCTGCAAGGACGGC AGCCGAACAGGATGCATCGACAAATATTCAAGACGTTCTTCAGCACATCGATGGTATGTCAGCACAAGAACAGAAAACTGTTTCTGGTGTGTTGACAATC GTCGAAGAACACACGAAAACCATAGAAACTTTCCGCGAGGATCACTCCTCCCAATCGTCAATTATGGAGAACAAATCACAGGAAACCTTCCTACAGCGCT TTATGGATTACGAGCCAACTGGAGAAACTCCGATGAGGACAGAACCGGAAGTTCCGAGCAAGGGCACAATCGAGGCGTTGCGAGCAATGCCGATGGAAGC ATTGGTGGAGGAATACCGAGAGAAGAACTCGTACGAGACGTTTGAGGTGAAGGAAATGAAACCATCTCTGATCCCACGCCCTCCATTTGCCCAAATCAAC TAG
AA sequence Show only first row Show all	>Lus10017016 pacid=23172949 polypeptide=Lus10017016 locus=Lus10017016.g ID=Lus10017016.BGIv1.0 annot-version=v1.0 MSGRHEKEKGVNVQVLLRCRPFSDDELRNHAPQVVTCNDYQREVAVSQNIAGKQIDRVFTFDKVFGPTAQQRDLYEQAVVPIVHEVLEGFNCTIFAYGQT GTGKTYTMEGECKRAKSGPNGELPQEAGVIPRAVKQIFDTLEGQNAEYSVKVTFLELYNEEITDLLAPEEISKISVDEKQKKQLPLMEDGKGGVLVRGLE EEIVASASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSITIHIKEATPEGEELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVIN ALVEHLGHIPYRDSKLTRLLRDSLGGRTKTCIIATVSPAVHCLEETLSTLDYAHRAKHIRNKPERFMQHVKRTVYIFRRNDTIRRKLKGSSMNQPLYCCA VYVQAMADQIEQMGVTIETHQKQFEELQERYHIQVRHCNDLSSKLAHTERNLHETSKLLANTEEELKKCRYALNEREFVISEQRKAESALTQQACVLRSD LEKALKDNASLFEKIGREDKLQSENRSLVDRFQAELSQQIGCLRSVVSKSTSQQDEHLQCAGNLCHSFLQTHDKAVKDMKRKLKNTRVLYTSHIEALQNV VHLHKASSTAGLEEISTLASSDAKSIEDYLASEGVEAASIFDDLGNALSTHQGEMAVFAGELRQRFNSSCEQTKQISDYTDGFLCKLLQQSKTLQNLVIE ADNFQMNSIADFQKAYEEQSKSDAEKLVADISNLVSHHILRQKELVNARLDGFREAAVGSKTFLDGQVSSLDSMTTEAKRKWQEYCVQAESDAKDGTDYS AAKHSRMETLLQQSVSNAETVFQHCKKTRESVNDMCSKHVSSLATLVRDACDSHDQHDAEIDSARTAAEQDASTNIQDVLQHIDGMSAQEQKTVSGVLTI VEEHTKTIETFREDHSSQSSIMENKSQETFLQRFMDYEPTGETPMRTEPEVPSKGTIEALRAMPMEALVEEYREKNSYETFEVKEMKPSLIPRPPFAQIN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36200			P-loop containing nucleoside t...		Lus10017016 [exp]	0	1
AT2G32590		EMB2795	EMBRYO DEFECTIVE 2795, unknown...		Lus10030028 [exp]	2.4	0.9680
AT1G54385			ARM repeat superfamily protein...		Lus10010672 [exp]	2.8	0.9537
AT3G18730		BRU1, MGO3, TSK	TONSOKU, MGOUN3, BRUSHY1, tetr...		Lus10037327 [exp]	3.5	0.9400
AT1G20060			ATP binding microtubule motor ...		Lus10033133 [exp]	3.9	0.9651
AT2G36200			P-loop containing nucleoside t...		Lus10021340 [exp]	5.3	0.9664
AT3G10180			P-loop containing nucleoside t...		Lus10010441 [exp]	5.5	0.9506
AT3G10180			P-loop containing nucleoside t...		Lus10012103 [exp]	6.7	0.9529
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Lus10016015 [exp]	8.0	0.9495
AT1G06590			unknown protein		Lus10034176 [exp]	12.4	0.8985
AT2G26760		CYCB1;4, CYC3	Cyclin B1;4 (.1)		Lus10026803 [exp]	13.0	0.9250

Compare expression of checked genes

Lus10017016 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.