Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36210 119 / 1e-35 SAUR-like auxin-responsive protein family (.1) AT4G09530 68 / 8e-16 SAUR-like auxin-responsive protein family (.1) AT3G43120 66 / 2e-14 SAUR-like auxin-responsive protein family (.1) AT4G34780 61 / 7e-13 SAUR-like auxin-responsive protein family (.1) AT5G20810 61 / 2e-12 SAUR-like auxin-responsive protein family (.1.2) AT3G53250 59 / 2e-12 SAUR-like auxin-responsive protein family (.1) AT5G66260 59 / 3e-12 SAUR-like auxin-responsive protein family (.1) AT3G51200 58 / 7e-12 SAUR-like auxin-responsive protein family (.1) AT4G34760 58 / 8e-12 SAUR-like auxin-responsive protein family (.1) AT1G16510 58 / 1e-11 SAUR-like auxin-responsive protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021341 [exp] 241 / 2e-83 AT2G36210 123 / 4e-37 SAUR-like auxin-responsive protein family (.1) Lus10034888 [exp] 61 / 3e-12 AT5G20810 210 / 2e-70 SAUR-like auxin-responsive protein family (.1.2) Lus10031754 [exp] 60 / 4e-12 AT3G12830 170 / 2e-55 SAUR-like auxin-responsive protein family (.1) Lus10026977 [exp] 60 / 1e-11 AT2G24400 184 / 1e-59 SAUR-like auxin-responsive protein family (.1) Lus10031178 [exp] 59 / 1e-11 AT1G56150 128 / 1e-38 SAUR-like auxin-responsive protein family (.1) Lus10012189 [exp] 57 / 1e-11 AT4G34760 169 / 3e-56 SAUR-like auxin-responsive protein family (.1) Lus10007553 [exp] 57 / 2e-11 AT4G34760 168 / 9e-56 SAUR-like auxin-responsive protein family (.1) Lus10012185 [exp] 56 / 4e-11 AT4G34770 139 / 3e-44 SAUR-like auxin-responsive protein family (.1) Lus10007560 [exp] 56 / 6e-11 AT4G34770 139 / 3e-44 SAUR-like auxin-responsive protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G211000 [exp] 158 / 5e-51 AT2G36210 130 / 3e-40 SAUR-like auxin-responsive protein family (.1) Potri.001G060400 [exp] 68 / 1e-14 AT5G50760 71 / 5e-15 SAUR-like auxin-responsive protein family (.1) Potri.003G167400 [exp] 67 / 1e-14 AT5G50760 100 / 4e-27 SAUR-like auxin-responsive protein family (.1) Potri.006G278100 [exp] 64 / 1e-13 AT2G24400 179 / 5e-58 SAUR-like auxin-responsive protein family (.1) Potri.008G037900 [exp] 62 / 3e-13 AT2G37030 103 / 2e-29 SAUR-like auxin-responsive protein family (.1) Potri.009G126000 [exp] 59 / 3e-12 AT4G34760 179 / 4e-60 SAUR-like auxin-responsive protein family (.1) Potri.006G137200 [exp] 61 / 4e-12 AT5G20810 201 / 1e-66 SAUR-like auxin-responsive protein family (.1.2) Potri.004G164400 [exp] 59 / 4e-12 AT4G34760 182 / 4e-61 SAUR-like auxin-responsive protein family (.1) Potri.018G063400 [exp] 60 / 6e-12 AT5G20810 219 / 3e-74 SAUR-like auxin-responsive protein family (.1.2) Potri.013G111000 [exp] 56 / 2e-11 AT4G09530 93 / 3e-26 SAUR-like auxin-responsive protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02519 [flax] [poplar] Auxin_inducible Auxin responsive protein
Representative CDS sequence Show only first row Show all	>Lus10017018 pacid=23172962 polypeptide=Lus10017018 locus=Lus10017018.g ID=Lus10017018.BGIv1.0 annot-version=v1.0 ATGCTAGGAGAAAAGATGGTGTCTTTCAGGAAACTGGCGAGGAAAGTCAAGGTAATAACCCGGAGCAGCAGCAGCAGCAGCAATTACTTCGACCAATACG ACATGTCGTCGCCGCATCTGGAGTGCCTGCTGGTGGAGGATAATGATCAGGAGTCGGGAGCTGCGACGCCGATGGGGTACTTCGCGGTGTACGTAGGGGA AGATAAAGAGAGGTATGTGGTCCCCACTGGGTTCCTGTCTCACCCTTTGTTCAAGATGTTGATGGAGAAAGCTTACAGCGACCAGCAGAGGGACAGGCTG GTCATTCCCTGCAGCGTGTCTACGTTCCAGGAGGTCGTGAATGCTGTCCAGTGCTGTAATGGGAGGTTTGATCTCGGGAATTTGGTGGAGGAGTTGTTGT AG
AA sequence Show only first row Show all	>Lus10017018 pacid=23172962 polypeptide=Lus10017018 locus=Lus10017018.g ID=Lus10017018.BGIv1.0 annot-version=v1.0 MLGEKMVSFRKLARKVKVITRSSSSSSNYFDQYDMSSPHLECLLVEDNDQESGAATPMGYFAVYVGEDKERYVVPTGFLSHPLFKMLMEKAYSDQQRDRL VIPCSVSTFQEVVNAVQCCNGRFDLGNLVEELL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36210			SAUR-like auxin-responsive pro...		Lus10017018 [exp]	0	1
AT5G14230			unknown protein		Lus10015811 [exp]	6.5	0.7495
AT4G22780		ACR7	ACT domain repeat 7 (.1)		Lus10006662 [exp]	8.4	0.8174
AT3G05320			O-fucosyltransferase family pr...		Lus10040618 [exp]	13.7	0.7550
					Lus10039878 [exp]	17.9	0.7715
AT4G24570		DIC2	dicarboxylate carrier 2 (.1)		Lus10015570 [exp]	22.9	0.7971
AT2G25270			unknown protein		Lus10038102 [exp]	28.1	0.7869
AT1G70140		ATFH8	formin 8 (.1)		Lus10042154 [exp]	29.4	0.7269
AT5G17350			unknown protein		Lus10035268 [exp]	35.2	0.7540
AT5G43400			Uncharacterised conserved prot...		Lus10013399 [exp]	35.7	0.7375
AT5G42660			Protein of unknown function (D...		Lus10024684 [exp]	35.9	0.7587

Compare expression of checked genes

Lus10017018 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.