Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11470 327 / 2e-111 4'-phosphopantetheinyl transferase superfamily (.1.2.3) AT2G02770 255 / 3e-79 4'-phosphopantetheinyl transferase superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021344 [exp] 551 / 0 AT3G11470 349 / 7e-121 4'-phosphopantetheinyl transferase superfamily (.1.2.3) Lus10004722 [exp] 66 / 4e-12 AT3G11470 62 / 8e-11 4'-phosphopantetheinyl transferase superfamily (.1.2.3) Lus10008521 [exp] 61 / 4e-10 AT3G11470 62 / 2e-10 4'-phosphopantetheinyl transferase superfamily (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G211300 [exp] 385 / 2e-134 AT3G11470 345 / 5e-119 4'-phosphopantetheinyl transferase superfamily (.1.2.3) Potri.016G078400 [exp] 366 / 7e-127 AT3G11470 328 / 8e-113 4'-phosphopantetheinyl transferase superfamily (.1.2.3) Potri.010G238500 [exp] 58 / 2e-09 AT3G11470 56 / 8e-09 4'-phosphopantetheinyl transferase superfamily (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0670 [flax] [poplar] 4PPT PF01648 [flax] [poplar] ACPS 4'-phosphopantetheinyl transferase superfamily
Representative CDS sequence Show only first row Show all	>Lus10017021 pacid=23172995 polypeptide=Lus10017021 locus=Lus10017021.g ID=Lus10017021.BGIv1.0 annot-version=v1.0 ATGGGATTTGATGCTTTCATCTCTCCGAGGATCGTTTTCGAACATTTCGCCAATGAATTCACGATGCTGCTGTCTACCGAGAAGCTTCTCCACCGCTTTG CCCCCCGTCCATCTCCCTTCTCGAATGTATGCACGTTCAACATCTCAGTTTTCTTGTTGAGTTCGTTTGTCGAGAATGTAACGGATTGCCGAGACAGGGA AACGCACCTGTGGTACATGGTTCCAGATGAGGTGAATAGTGCTTCTCTGTTGAGTCAATACATGGAGCTTTTGCCGCAGTCAGAGCGAGATCACGTCCTC AGCTTCCGCGGAGATCAGCTTCAGAAGAGTGCTTTGCTTGCTCGTACATTAGTTCGCACAACCATTGCAAGATATCAGGTAAATGGTCATCTTGATCCTA GGACGTTGAGGTTCAACAGGAACATCCATGGGAAGCCTGAGGTGGAGTGGCAATCTATAGATGACTGGTGCTCGCCTCCATTGCATTTCAACATTTCTCA TACTCCTTCTTTAGTTGCTTGTGGAGTGGCTGTGAATTCGTCTATTGGCATTGATGTTGAGGAGAAGCAACGAAGGACCAAGCATAGCATCCTAGCTTTT GCAAAACGTTATTTCTCTGCCCATGAAGTCCAACATTTAAACGCAATTCCCGATCTTGAACTTCAGCAGCAGGAGTTTATAAAGTTATGGACCCTTAAGG AGGCATACGTTAAAGCCTTGGGAAAAGGCTTCTCTTCTGCACCATTCAAGACCTTTACTATTAGGGTTAATACTGCTACCAAAGGAAGCTTTTGTGAAAA TAATCAGGCATCTGGAATAGTTGTCGAATCTGTTGATAACCCTACGAATCACACAAACGATTGGCAGTTAGCTGTCTTGGAGCTGACTCGCTCCCATTAC GTTGCTATTTGCTTAGAGACGGAGAAAACCGATGGAGGCAGAAATGCAGCTCCAATCAAGTTATGTGCAAGAAGAACCATTCCATTTGTGGAAGACGAAC TTGTTTCTGGAACTAATGCAGTTGTAACAATCGGAGGCTTTGTTAAACACTGCTAA
AA sequence Show only first row Show all	>Lus10017021 pacid=23172995 polypeptide=Lus10017021 locus=Lus10017021.g ID=Lus10017021.BGIv1.0 annot-version=v1.0 MGFDAFISPRIVFEHFANEFTMLLSTEKLLHRFAPRPSPFSNVCTFNISVFLLSSFVENVTDCRDRETHLWYMVPDEVNSASLLSQYMELLPQSERDHVL SFRGDQLQKSALLARTLVRTTIARYQVNGHLDPRTLRFNRNIHGKPEVEWQSIDDWCSPPLHFNISHTPSLVACGVAVNSSIGIDVEEKQRRTKHSILAF AKRYFSAHEVQHLNAIPDLELQQQEFIKLWTLKEAYVKALGKGFSSAPFKTFTIRVNTATKGSFCENNQASGIVVESVDNPTNHTNDWQLAVLELTRSHY VAICLETEKTDGGRNAAPIKLCARRTIPFVEDELVSGTNAVVTIGGFVKHC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11470			4'-phosphopantetheinyl transfe...		Lus10017021 [exp]	0	1
AT3G21820		SDG36, ATXR2	SET DOMAIN PROTEIN 36, histone...		Lus10015102 [exp]	3.9	0.9273
AT5G59613			unknown protein		Lus10005899 [exp]	6.8	0.9262
AT1G79915			Putative methyltransferase fam...		Lus10035886 [exp]	7.7	0.9036
AT5G04870		AK1, ATCPK1, CP...	calcium dependent protein kina...		Lus10008958 [exp]	8.7	0.9192
AT2G34470		PSKF109, UREG	urease accessory protein G (.1...		Lus10004922 [exp]	8.7	0.9132
AT5G61970			signal recognition particle-re...		Lus10032538 [exp]	12.0	0.9058
AT5G27600		LACS7, ATLACS7	long-chain acyl-CoA synthetase...		Lus10029918 [exp]	12.4	0.9197
AT1G26750			unknown protein		Lus10019740 [exp]	15.0	0.9012
AT2G18250		ATCOAD	4-phosphopantetheine adenylylt...		Lus10026004 [exp]	16.7	0.9054
					Lus10027730 [exp]	17.5	0.9105

Compare expression of checked genes

Lus10017021 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.