Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03910 614 / 0 ABCB29, ATATH12 ARABIDOPSIS THALIANA ABC TRANSPORTER HOMOLOG 12, ATP-binding cassette B29, ABC2 homolog 12 (.1) AT3G28345 206 / 4e-56 MDR13, ABCB15 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) AT3G28360 205 / 1e-55 ABCB16, PGP16 ATP-binding cassette B16, P-glycoprotein 16 (.1) AT3G28415 201 / 2e-54 ABCB22 ATP-binding cassette B22, ABC transporter family protein (.1) AT3G28390 201 / 3e-54 ABCB18, PGP18 ATP-binding cassette B18, P-glycoprotein 18 (.1) AT3G28380 196 / 8e-53 ABCB17, PGP17 ATP-binding cassette B17, P-glycoprotein 17 (.1) AT1G28010 193 / 9e-52 MDR12, ATABCB14, ABCB14, PGP14 multi-drug resistance 12, Arabidopsis thaliana ATP-binding cassette B14, ATP-binding cassette B14, P-glycoprotein 14 (.1) AT3G28860 191 / 5e-51 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) AT1G27940 191 / 7e-51 ABCB13, PGP13 ATP-binding cassette B13, P-glycoprotein 13 (.1) AT5G39040 182 / 2e-49 AtALS1, ABCB27, ALS1, ATTAP2 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021348 [exp] 840 / 0 AT5G03910 481 / 4e-164 ARABIDOPSIS THALIANA ABC TRANSPORTER HOMOLOG 12, ATP-binding cassette B29, ABC2 homolog 12 (.1) Lus10021349 [exp] 253 / 3e-81 AT5G03910 185 / 3e-56 ARABIDOPSIS THALIANA ABC TRANSPORTER HOMOLOG 12, ATP-binding cassette B29, ABC2 homolog 12 (.1) Lus10036616 [exp] 202 / 3e-58 AT3G28345 479 / 6e-159 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10032911 [exp] 206 / 4e-56 AT3G28860 960 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10015595 [exp] 205 / 2e-55 AT3G28860 971 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10035834 [exp] 202 / 2e-54 AT3G28345 1271 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10043069 [exp] 201 / 3e-54 AT3G28390 1232 / 0.0 ATP-binding cassette B18, P-glycoprotein 18 (.1) Lus10039458 [exp] 201 / 3e-54 AT3G28345 1835 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10005839 [exp] 198 / 2e-53 AT3G28345 1834 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G211700 [exp] 742 / 0 AT5G03910 709 / 0.0 ARABIDOPSIS THALIANA ABC TRANSPORTER HOMOLOG 12, ATP-binding cassette B29, ABC2 homolog 12 (.1) Potri.015G059700 [exp] 204 / 6e-57 AT5G39040 874 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.015G059600 [exp] 199 / 2e-55 AT5G39040 874 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.015G059800 [exp] 199 / 2e-55 AT5G39040 887 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.011G133800 [exp] 199 / 1e-53 AT3G28345 1268 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.001G417600 [exp] 195 / 3e-52 AT3G28345 1241 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.002G019600 [exp] 194 / 6e-52 AT1G27940 1654 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Potri.017G085000 [exp] 193 / 1e-51 AT3G28345 1774 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.017G081100 [exp] 190 / 1e-50 AT3G28860 2107 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Potri.016G093600 [exp] 190 / 2e-50 AT2G36910 2120 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [flax] [poplar] ABC_membrane PF00664 [flax] [poplar] ABC_membrane ABC transporter transmembrane region CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10017024 pacid=23173028 polypeptide=Lus10017024 locus=Lus10017024.g ID=Lus10017024.BGIv1.0 annot-version=v1.0 ATGGCGCTTCCGCTACGTCTTCAGGTTCAGCTCAATCCTTCTGCTCCTCGACCTCGACTCCCTTCCTTCACTCTACGCCCACCGAAGCTTCTCCACTTAT CACCTACTAGTCTCCAAACACCCAAACTTCTTCATTCTCATAACAAACACCTCAATTCCGGCCGACTCCGGCCTCTCCACGCCACTGCCGAACTATTACC CTCACGCGACGATGATTCACTCCCCCGCACGCTCCGGTCTTTCTCCCGGATTAAACCCTATGTTCTCTCCCAGCAAAAGTTAGTGCTCCTCGGCTGGCTC TGCAGTCTTCTCTCAGTCGTTTCCCTCTCCCAGGTCGTGTCCCGGTTCGGAAGGTTCACTTCTTGCATCGGTAAGATGGATATGAGGACGATGATCACCC AAGGTTCGGTTCTGGGAGTTTTCTTCTTGGCTAAGCTGATTGCCACTTATCTGCAACAGGCGATGTTGTGGGAGGCTTCGCTGAAAGCGGTTTGCGATAT GAGAGGTGATGTCTTCCGAGGGGTTCTGGGGAGGGAATTAGGTTATTTTGAAGGAGGAAGCGGTGTCTCTTCTGGAGATATTGCTCATAGGATCACGGAC GAGGCTGAGGATGTTGCTGACACGCTCTTTGCGCTTCTCAATACCATTGTGCCCGGTGCTATGCAGCTATCAGCAATGGCTACGCAGATGTTGGTCATCA GTCCTGCCCTTTCCACGATTTCAGCCATGGTGGTTCCCTGTACATCTCTTGCCATTGCTTACCTTGGTGCAAGGATGCGGAAGATATCCAAGGATGCACA CCTTAGTGTTGCTAATGTATCTGCATACCTCAATGAGGTACTCCCAGCAATTCTCTTTGTTAAGGCAAACAATGCAGAACTATGTGAGAGTGTCAGGTTC CAGAGGCTTGCTGATGCTGACCTATTGGCACATCTTAAAAAGAAGAAAATGAAGGCACTCACCCCCCAGATCATACAGATAATATATTTTGGAGGGTTGT TTACCCTTTGTGTTGGATCACTTGTAGTCTCAAAGGGCTGTTTTGATAGCTGCAACGTCGTTTCTTTCATGACATCACTGATTTTCTTGGTCGAGCCGAT CCAGGATTTTGGGAAAGCATTCAATGAGTGGAAGCAAGGAGAACCTGCGATAGAGCGATTATTTGATTTGGCTAACTTCAAATCTAAGGTGGTTGACAAA CAGGATGTCATTGAGCTGAAGTCTATGAAGGGAGATGTCAAATTTTATGATGTTTCATTCCAATATGGGGACAATAGGCCTCTCGTACTGAATAAACTTA ACCTTCACATCCAAGCCGGTGAAACTGTTGCACTAATTGGGCCATCTGGAGGTGGGAAGACGACCCTTGTGAAATTGCTTCTGCGGCTTTATGATCCTTT ATCTGGTGGAATCCTCCTAGATAACAGAAATATCCAGAACATACATTTGGAGAGTTTGAGGAGACATGTTAGTCTGGTTTCTCAGGATACTACGATATTT TCAGGAACAATTGCTGAAAACATTGGATATAAAGATTTGACAACAAAAGTAGACATGGAGAAGGTGAAGATGGCTGCACGAAATGCAAATGCAGATGAAT TCATTAGGATGCTTCCTAAGGGTTATGAGACAAGTGTTGGACCAAGGGGCTCATGCTTGAGTGGAGGCCAAAAGCAAAGGCTCGCTATCGCAAGGGCAAT CTATCAGGATGCTGCTATATTGATCTTGGATGAGGCCACCTCTGCCTTGGACAGCAAGTCTGAGTTGCTGGTGAGACAAGCTCTGGAGCGGCTAACAAAA AATCACACGGTGCTGGTGATTGCCCACCGGCTGGAGACAGTCCTGATGGCTGACCGAATATTGCTTCTTGACAAAGGGGAGCTTCGGGAGATTAGTCGAT CGAGTATTCTGAATGAACACCAAACCTACATGGCATCGAATGAGATCGTTATCTGA
AA sequence Show only first row Show all	>Lus10017024 pacid=23173028 polypeptide=Lus10017024 locus=Lus10017024.g ID=Lus10017024.BGIv1.0 annot-version=v1.0 MALPLRLQVQLNPSAPRPRLPSFTLRPPKLLHLSPTSLQTPKLLHSHNKHLNSGRLRPLHATAELLPSRDDDSLPRTLRSFSRIKPYVLSQQKLVLLGWL CSLLSVVSLSQVVSRFGRFTSCIGKMDMRTMITQGSVLGVFFLAKLIATYLQQAMLWEASLKAVCDMRGDVFRGVLGRELGYFEGGSGVSSGDIAHRITD EAEDVADTLFALLNTIVPGAMQLSAMATQMLVISPALSTISAMVVPCTSLAIAYLGARMRKISKDAHLSVANVSAYLNEVLPAILFVKANNAELCESVRF QRLADADLLAHLKKKKMKALTPQIIQIIYFGGLFTLCVGSLVVSKGCFDSCNVVSFMTSLIFLVEPIQDFGKAFNEWKQGEPAIERLFDLANFKSKVVDK QDVIELKSMKGDVKFYDVSFQYGDNRPLVLNKLNLHIQAGETVALIGPSGGGKTTLVKLLLRLYDPLSGGILLDNRNIQNIHLESLRRHVSLVSQDTTIF SGTIAENIGYKDLTTKVDMEKVKMAARNANADEFIRMLPKGYETSVGPRGSCLSGGQKQRLAIARAIYQDAAILILDEATSALDSKSELLVRQALERLTK NHTVLVIAHRLETVLMADRILLLDKGELREISRSSILNEHQTYMASNEIVI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03910		ABCB29, ATATH12	ARABIDOPSIS THALIANA ABC TRANS...		Lus10017024 [exp]	0	1
AT5G02810		APRR7, PRR7	pseudo-response regulator 7 (....		Lus10014018 [exp]	10.5	0.6457
AT4G33490			Eukaryotic aspartyl protease f...		Lus10033503 [exp]	15.1	0.6468
AT5G05980		ATDFB, FPGS1	folylpolyglutamate synthetase ...		Lus10030161 [exp]	29.0	0.6261
AT3G60070			Major facilitator superfamily ...		Lus10034394 [exp]	32.6	0.6076
AT4G32600			RING/U-box superfamily protein...		Lus10033075 [exp]	33.5	0.6202
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Lus10004833 [exp]	38.2	0.6175
AT5G02800		CDL1	CDG1-like 1, Protein kinase su...		Lus10003995 [exp]	52.6	0.5621
AT3G04460		PEX12, ATPEX12,...	ABERRANT PEROXISOME MORPHOLOGY...		Lus10029610 [exp]	65.6	0.5507
AT3G46450			SEC14 cytosolic factor family ...		Lus10016575 [exp]	72.6	0.5305

Compare expression of checked genes

Lus10017024 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.