Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G07390 349 / 4e-123 Mannose-P-dolichol utilization defect 1 protein (.1) AT5G59470 329 / 3e-115 Mannose-P-dolichol utilization defect 1 protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021350 [exp] 455 / 6e-165 AT4G07390 369 / 3e-131 Mannose-P-dolichol utilization defect 1 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G023800 [exp] 370 / 2e-131 AT4G07390 337 / 1e-118 Mannose-P-dolichol utilization defect 1 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [flax] [poplar] MtN3-like PF04193 [flax] [poplar] PQ-loop PQ loop repeat
Representative CDS sequence Show only first row Show all	>Lus10017025 pacid=23173004 polypeptide=Lus10017025 locus=Lus10017025.g ID=Lus10017025.BGIv1.0 annot-version=v1.0 ATGGAGTATCTAGGCATAGATTTTGGTTGTGCAATTGGATCTCTACGCCATGGCAACTTCCCTGAAAAGGATTGTTTGCTTCCTCTTATCTCCAAGCTCC TCGGCTACGCCATCGTCGCTGCTTCCACTACCGTCAAACTCCCTCAGATATTGAAAATTGTGAAGAACAGAAGTGTGAGAGGGCTTAGTGTCGTTGCCTT CGAGTTAGAAGTGATTGGATACACAATTGCACTCGCATATTGTCTTCATAAAGGGTTACCATTTTCAGCTTATGGAGAATATGCGTTTCTCCTCATCCAA GCTATAATCTTAGTTGCTGTTATCTACTACTTTTCACAACCTATCGGCACCAAGACATGGATCAAGGCATTATTATTTTCTGCGATAGCACCAACTATTC TAGCTGGTCAAATTGCTCCCATGCTTTTTGAAGCTCTATATGCATCACAACATGCGATATTCCTCTGTGCCAGAATCCCACAAATATGGGCGAACTTTTC GAACAAAAGCACTGGGGAGCTAAGCTTCTTAACCTTTTTCATGAACTTTGGTGGTTCCATGGTGCGAGTATTCACCAGCCTACAGGAAAAAGCACCTACA AGCGTTGTTCTTGGTTCGGCACTTGGCGTGGTCATGAATGGAACCATCTTAAGCCAAATACTAATGTATCAAAAGAAGCCACAACCCAAAAGAGGCAAGA AAGAAGAATAG
AA sequence Show only first row Show all	>Lus10017025 pacid=23173004 polypeptide=Lus10017025 locus=Lus10017025.g ID=Lus10017025.BGIv1.0 annot-version=v1.0 MEYLGIDFGCAIGSLRHGNFPEKDCLLPLISKLLGYAIVAASTTVKLPQILKIVKNRSVRGLSVVAFELEVIGYTIALAYCLHKGLPFSAYGEYAFLLIQ AIILVAVIYYFSQPIGTKTWIKALLFSAIAPTILAGQIAPMLFEALYASQHAIFLCARIPQIWANFSNKSTGELSFLTFFMNFGGSMVRVFTSLQEKAPT SVVLGSALGVVMNGTILSQILMYQKKPQPKRGKKEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G07390			Mannose-P-dolichol utilization...		Lus10017025 [exp]	0	1
AT1G23440			Peptidase C15, pyroglutamyl pe...		Lus10029137 [exp]	5.0	0.9179
AT5G17290		ATG5, APG5, ATA...	AUTOPHAGY 5, autophagy protein...		Lus10020737 [exp]	9.0	0.8751
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10028284 [exp]	9.2	0.8984
AT2G26210			Ankyrin repeat family protein ...		Lus10033419 [exp]	9.3	0.8738
AT3G18820		RAB71, AtRABG3f...	RAB GTPase homolog G3F (.1)		Lus10040468 [exp]	9.9	0.8951
AT1G50740			Transmembrane proteins 14C (.1...		Lus10008541 [exp]	14.1	0.8967
AT2G21120			Protein of unknown function (D...		Lus10012716 [exp]	15.3	0.8958
AT1G02305			Cysteine proteinases superfami...		Lus10007212 [exp]	17.1	0.9009
AT3G48860			unknown protein		Lus10036015 [exp]	18.2	0.8944
AT5G47540			Mo25 family protein (.1)		Lus10010497 [exp]	18.8	0.8316

Compare expression of checked genes

Lus10017025 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.