Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00830 275 / 6e-88 LIF2 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT3G52660 206 / 1e-61 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G28390 130 / 4e-36 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G44710 92 / 1e-19 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G33410 78 / 2e-15 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G50250 71 / 1e-13 CP31B chloroplast RNA-binding protein 31B (.1) AT5G47620 72 / 2e-13 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT4G14300 71 / 5e-13 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G34110 71 / 5e-13 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) AT3G52380 70 / 5e-13 CP33, PDE322 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021351 [exp] 343 / 3e-114 AT3G52660 478 / 3e-166 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10043390 [exp] 318 / 3e-105 AT3G52660 444 / 7e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10034195 [exp] 297 / 8e-97 AT3G52660 444 / 7e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10002689 [exp] 251 / 1e-78 AT4G00830 591 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Lus10030207 [exp] 246 / 5e-77 AT4G00830 601 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Lus10003287 [exp] 89 / 1e-18 AT3G55340 291 / 6e-91 phragmoplastin interacting protein 1 (.1) Lus10030327 [exp] 87 / 3e-18 AT3G55340 275 / 9e-85 phragmoplastin interacting protein 1 (.1) Lus10028162 [exp] 87 / 4e-18 AT2G44710 675 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10002222 [exp] 78 / 5e-16 AT3G53460 263 / 1e-87 chloroplast RNA-binding protein 29 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G163400 [exp] 339 / 1e-112 AT3G52660 400 / 9e-136 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.004G201900 [exp] 326 / 2e-107 AT3G52660 422 / 2e-144 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.014G104500 [exp] 268 / 3e-85 AT4G00830 574 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Potri.002G178200 [exp] 266 / 2e-84 AT4G00830 558 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Potri.006G212400 [exp] 262 / 4e-83 AT3G52660 473 / 1e-164 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G079200 [exp] 245 / 2e-76 AT3G52660 449 / 4e-155 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G139700 [exp] 94 / 1e-20 AT2G44710 585 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G051500 [exp] 89 / 6e-19 AT2G44710 627 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G209701 [exp] 86 / 4e-18 AT3G55340 265 / 2e-82 phragmoplastin interacting protein 1 (.1) Potri.005G116400 [exp] 85 / 2e-17 AT2G44710 325 / 1e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10017026 pacid=23173035 polypeptide=Lus10017026 locus=Lus10017026.g ID=Lus10017026.BGIv1.0 annot-version=v1.0 ATGCCGAGGGCAAGGGACAATGCTACAGATGCTGACAGGCAAGATGAATGTGAAAGTTCTGTGGATTCTGAGCCTGAAGAACAGGTAGATCTTGATGGTG ACAATGACACCGAGGAGCAGATGGAAGAGGAGGTTGAATATGAGGAAGTAGAGGAGGAGGTTGAAGAAGATGAAGAGGAGGAAGAGGTGGAAGAGGAGGT GGAAGAAGATGATGAGGAGATAGTTAATGAGGAAAAGGGAGATGAGGAAAGGAAGCATGCTGAACTTCTGGCACTGCCTCCTCATGGATCAGAGGTTTAT GTTGGTGGCATCCCTCACAATGTTTCGGAAAATGATTTGAGACGCTTTTGTGAATCTGTTGGGGAGGTTACAGAGGTGAGGATAATGAAAGGAAAGGAGT CAGGTGAAGGCAAGGGTTATGCATTTGTCACTTTCAGAACAAAGGAATTGGCTACTAGAGCCATGAAAGATCTAAACCATTCTGACTTCAAGGGGAAAAA GGTTAAGTGCTCTGCATCTCAAGTAAACCATAGATTGTTTATCGGCAATGTACCAAGAATTTGGGGAGAGGAAGATATGAAGAAGGTCGTAAGGAAGATA GGACCTGGAGTTATTTCTGTGGACATGTTAAAGGTTAAGGCTATTTATGTGAAGAACTTGCCCAAAGATATTACTCAGGATCAACTGAAGCAGCTGTTTG AACATCATGGAAAAGTTACCAAAGTAGTTCTCCCTCCTGCAAAACCAGGACATGAGAGGAGCAGATTTGGGTTCGTGCACTTCTCAGAGCGATCAAGTGC CATGAAAGCACTGAAAAACACTGAGAAATATGAAATTGATGGTCGAGTCCTGGACTGTTCCTTGGCGAAACCTCAAGCAGATAATAAGTCAGTTGGAGGA ACTAGTTCTCAGAAGCCAGCCGTCACTACTACAACCTTGCCCCCACGCCTCGGTTATGGATTAGTTGGAAATCCTTATGCTGCTCTGGGTGGATTTGGTG CTGCAGGCTTTCCGCAACCTATGTTTTACGGAGCGGAACCGACTCCAGCCGGTATGGCTATGATGCCGATGTTTTTACCCGATGGAAGGGTAGGATACGT CCTACAGCAGCCAGCTGGGATTCAACCACATATCCCGATCCCGCAACCTCGTGGGGGTAGGGGTGGGGGTAGTTCGAGTAGCTCCAGCAGGGGGAAGCGT TATAGCGATGGTGGTCATCGTGGACGAGGACGTTATAATCCTTATTGA
AA sequence Show only first row Show all	>Lus10017026 pacid=23173035 polypeptide=Lus10017026 locus=Lus10017026.g ID=Lus10017026.BGIv1.0 annot-version=v1.0 MPRARDNATDADRQDECESSVDSEPEEQVDLDGDNDTEEQMEEEVEYEEVEEEVEEDEEEEEVEEEVEEDDEEIVNEEKGDEERKHAELLALPPHGSEVY VGGIPHNVSENDLRRFCESVGEVTEVRIMKGKESGEGKGYAFVTFRTKELATRAMKDLNHSDFKGKKVKCSASQVNHRLFIGNVPRIWGEEDMKKVVRKI GPGVISVDMLKVKAIYVKNLPKDITQDQLKQLFEHHGKVTKVVLPPAKPGHERSRFGFVHFSERSSAMKALKNTEKYEIDGRVLDCSLAKPQADNKSVGG TSSQKPAVTTTTLPPRLGYGLVGNPYAALGGFGAAGFPQPMFYGAEPTPAGMAMMPMFLPDGRVGYVLQQPAGIQPHIPIPQPRGGRGGGSSSSSSRGKR YSDGGHRGRGRYNPY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Lus10017026 [exp]	0	1
AT3G52030			F-box family protein with WD40...		Lus10005328 [exp]	1.4	0.8582
AT4G32910			unknown protein		Lus10011625 [exp]	2.0	0.8632
AT1G32090			early-responsive to dehydratio...		Lus10002133 [exp]	3.2	0.8195
AT4G33060			Cyclophilin-like peptidyl-prol...		Lus10024999 [exp]	4.6	0.8557
AT2G47620		CHB1, ATSWI3A	SWITCH/sucrose nonfermenting 3...		Lus10032555 [exp]	4.9	0.8332
AT5G06160		ATO	ATROPOS, splicing factor-relat...		Lus10019024 [exp]	5.0	0.8539
AT5G55310		TOP1alpha, TOP1...	DNA topoisomerase 1 beta (.1)		Lus10032571 [exp]	6.5	0.8138
AT1G55150			DEA(D/H)-box RNA helicase fami...		Lus10015627 [exp]	7.3	0.8433
AT1G76950		PRAF1	Regulator of chromosome conden...		Lus10018904 [exp]	7.7	0.8149
AT5G63200			tetratricopeptide repeat (TPR)...		Lus10033033 [exp]	7.9	0.7902

Compare expression of checked genes

Lus10017026 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.