Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G57790 286 / 7e-93 F-box family protein (.1) AT3G56470 268 / 7e-86 F-box family protein (.1) AT4G00893 265 / 2e-84 unknown protein AT4G12370 224 / 1e-69 unknown protein AT4G10660 223 / 5e-69 CDC68-related (.1) AT1G49360 191 / 9e-55 F-box family protein (.1) AT4G10695 171 / 4e-50 CDC68-related (.1) AT3G18720 175 / 5e-50 F-box family protein (.1) AT4G12382 137 / 1e-38 F-box family protein (.1.2) AT2G44735 104 / 2e-24 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021352 [exp] 731 / 0 AT1G57790 292 / 1e-96 F-box family protein (.1) Lus10022706 [exp] 537 / 0 AT1G57790 293 / 3e-97 F-box family protein (.1) Lus10014208 [exp] 531 / 0 AT1G57790 286 / 2e-94 F-box family protein (.1) Lus10010397 [exp] 203 / 7e-64 ND / Lus10008153 [exp] 201 / 3e-63 ND / Lus10008850 [exp] 196 / 1e-60 AT1G48120 39 / 8e-04 hydrolases;protein serine/threonine phosphatases (.1) Lus10016306 [exp] 197 / 2e-60 ND / Lus10015869 [exp] 184 / 9e-56 AT1G48120 44 / 3e-05 hydrolases;protein serine/threonine phosphatases (.1) Lus10006285 [exp] 177 / 4e-54 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G079300 [exp] 609 / 0 AT1G57790 313 / 5e-105 F-box family protein (.1) Potri.006G212600 [exp] 583 / 0 AT1G57790 294 / 2e-97 F-box family protein (.1) Potri.012G106800 [exp] 94 / 1e-20 AT1G57790 99 / 6e-23 F-box family protein (.1) Potri.002G015700 [exp] 47 / 1e-05 AT5G60060 63 / 5e-11 Protein of unknown function (DUF295) (.1) Potri.002G166500 [exp] 45 / 7e-05 AT3G61590 542 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.014G093200 [exp] 45 / 9e-05 AT3G61590 538 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10017027 pacid=23172956 polypeptide=Lus10017027 locus=Lus10017027.g ID=Lus10017027.BGIv1.0 annot-version=v1.0 ATGCCAGAGGCTGTTGTCAGGCCTGCTGATGGCGTATTGTATGATGTGCGTCACTCGAGGTGCAATTTCAGCCATCCCGGTGCTTTGGCATACTTTCTAA AGATTAGCATACCGTTTGTACCTCGTGCACCTGACGGTAATGTGTTCCCCGATTACATGACCTGGTATCTCGACCGCACACATCCATACATCACCCCGTC ACTCACGACAGATGAGCCCCCGGTTTCTGATTATCCGCCACAGCCTCTTTCTGATCGCATTGGCCACGGATTGGCGCCCTTTTGGGAAGCTGACACTGTA GAGGCTTTCGTTGACAGAGGAGCAGAGTACTTCGGGTTGCTTATCATTTGCTTGATTAATTGTACTGAATTGGGGTTAGCTGAAACAGTGCCAAATGATA GAACATTGACGACATCCACAAACAAAAAAGAGAATTCAGAACTTGAAACTTGGTCCGACCTACCTACAGAACTCCTGGAACTGATTTTCGGCAGCTTATC TTTTCAAGATAATATCCGTGCTTCTGCTGCTTGCAGGCGATGGCACACGATTGCTGTTTCTATCAGGACGGTGAACAAACCCCCCTGGCTCATGTATTTT CCGAAATTCGGTAGCCTGTTTGAATTCTACGATCCTGCAAAGCGTAAGACTTATTCCCTCGAGTTATCGGAGTTGTGTGGGTCCAGAGTTTGCTATACCA AAGATGGCTGGTTGCTGCTCTACAGACCTAGAACGCATCGTGTGTTTTTCTGTAACCCGTTTTCTCGAGAAATTGTCAAGCTTCCGAGGTACGAATTGAC TTTTCAGATAGTTGCATTCTCTGGTCCTCCAACATCTACCGGCTGTGTAGTGTTCACAGTTAAGCATATAAGTCCTACTGTAGTTGCTATCAGTACTTGC AAGCCCGGGGCAACGGAATGGGTTACTGTTAATTACCAGAATCGATTGCCTTTCGTTAGTAGTATATGGAATAAGGTTGTTTTCTGCAGTGGACACTTCT ACTGTTTAAGCCTCACAGGGTGGCTAGGTGTTTTCAACCCCGTGGAATGCACTTGGAACGTTCTTGCTGTGCCGCCACCTAAGTGCCCCGAGAATTTCTT TGCTAAGAATTGGTGGAAGGGGAAATTCATGACTGAGCATAATGGAGAGATTCTAGTGATCTATACTTGCTGCAGCCAGAATCCCATTATATTCAGGCTC GATCAGCCGAAGATGGTCTGGGAAGAGATGAAATCACTAGATGGCTTGACTCTGTTTGCAAGTTTCTTGTCGTCTCAGTCTAGAGTTGACTTGGCAGGCA ACATGAGGAACAATATCTTCTTCTCCAAGGTTCGTTTCTTTGGGAAACGATGCATATCTTATTCGCTCGATGACGGTAGATACTATCCGTGCAAGCGGTG CTACGATTGGGGTGAGCAGGATCCCTTTGCGAATATATGGATCGACCCTCCTGAAGACCTCTCCAGCTTTCTATGA
AA sequence Show only first row Show all	>Lus10017027 pacid=23172956 polypeptide=Lus10017027 locus=Lus10017027.g ID=Lus10017027.BGIv1.0 annot-version=v1.0 MPEAVVRPADGVLYDVRHSRCNFSHPGALAYFLKISIPFVPRAPDGNVFPDYMTWYLDRTHPYITPSLTTDEPPVSDYPPQPLSDRIGHGLAPFWEADTV EAFVDRGAEYFGLLIICLINCTELGLAETVPNDRTLTTSTNKKENSELETWSDLPTELLELIFGSLSFQDNIRASAACRRWHTIAVSIRTVNKPPWLMYF PKFGSLFEFYDPAKRKTYSLELSELCGSRVCYTKDGWLLLYRPRTHRVFFCNPFSREIVKLPRYELTFQIVAFSGPPTSTGCVVFTVKHISPTVVAISTC KPGATEWVTVNYQNRLPFVSSIWNKVVFCSGHFYCLSLTGWLGVFNPVECTWNVLAVPPPKCPENFFAKNWWKGKFMTEHNGEILVIYTCCSQNPIIFRL DQPKMVWEEMKSLDGLTLFASFLSSQSRVDLAGNMRNNIFFSKVRFFGKRCISYSLDDGRYYPCKRCYDWGEQDPFANIWIDPPEDLSSFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G57790			F-box family protein (.1)		Lus10017027 [exp]	0	1
AT4G16580			Protein phosphatase 2C family ...		Lus10010797 [exp]	2.2	0.8359
AT1G02290			unknown protein		Lus10018907 [exp]	3.9	0.8209
AT1G12450			SNARE associated Golgi protein...		Lus10006674 [exp]	4.0	0.8334
AT4G33630		EX1	EXECUTER1, Protein of unknown ...		Lus10020435 [exp]	5.7	0.8165
AT1G02290			unknown protein		Lus10028606 [exp]	6.5	0.8140
AT1G12680		PEPKR2	phosphoenolpyruvate carboxylas...		Lus10041132 [exp]	7.7	0.8153
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10040790 [exp]	10.6	0.8083
AT3G29400		ATEXO70E1	exocyst subunit exo70 family p...		Lus10035146 [exp]	14.7	0.6894
AT4G37440			unknown protein		Lus10014864 [exp]	15.3	0.7954
AT1G12855			F-box family protein (.1)		Lus10029699 [exp]	15.9	0.7903

Compare expression of checked genes

Lus10017027 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.