Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 224 / 2e-65 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 210 / 3e-60 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 192 / 5e-54 EFR EF-TU receptor (.1) AT5G48940 187 / 3e-52 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G47580 184 / 5e-51 Leucine-rich repeat protein kinase family protein (.1) AT1G35710 176 / 2e-48 Protein kinase family protein with leucine-rich repeat domain (.1) AT3G47110 175 / 5e-48 Leucine-rich repeat protein kinase family protein (.1) AT5G56040 172 / 3e-47 Leucine-rich receptor-like protein kinase family protein (.1.2) AT5G46330 172 / 4e-47 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT3G24240 172 / 6e-47 Leucine-rich repeat receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011387 [exp] 423 / 2e-139 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011386 [exp] 424 / 6e-138 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011388 [exp] 400 / 8e-131 AT3G47570 757 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030587 [exp] 392 / 8e-128 AT3G47570 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10014500 [exp] 385 / 1e-125 AT3G47570 663 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030845 [exp] 381 / 1e-123 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 379 / 1e-122 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030854 [exp] 372 / 1e-120 AT3G47110 758 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 370 / 1e-119 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G102700 [exp] 297 / 7e-92 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102800 [exp] 275 / 5e-84 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 270 / 5e-82 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G007866 [exp] 268 / 3e-81 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 268 / 4e-81 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G103000 [exp] 265 / 2e-80 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G151400 [exp] 259 / 4e-78 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G133100 [exp] 259 / 8e-78 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102900 [exp] 258 / 2e-77 AT3G47570 843 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G228200 [exp] 256 / 5e-77 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10017028 pacid=23172983 polypeptide=Lus10017028 locus=Lus10017028.g ID=Lus10017028.BGIv1.0 annot-version=v1.0 ATGAGCAAACTTCAACATTTTGCGGTAAGTGCAAACAATCTTAACGGAAGCATCCCTCTCGCATTCGGCAACTTGTCATCTCTTCAAATGTTTTACGTAT TCGAGAACCAGTTGAGTGGGAGAATTCCAGCTACTCTAGGTCGATTGAAGAGCATTCAGTTATTGGCATTTCAACATAATAACTTATCTGATAACCAGTT TACTGGTAGTGTTCCACCTTCCTTATCCAATGTCTCCAGTTTGGTTCTACTACAAATCGATAGCAACAATTTTACGGGGAACATGCCTAGAATGGAGGTC TCTAACAAGCTTACATGGTTTACTATCTTTGACAACTCTCTAGGAAGTGCAAAGGCTAATGATTTGATGTTCCTCTCTTCTTTGACCAATGCCACAAGTT TGGAACGGATGAGTATTCAACGAAATAATTTCAGAGGTAACTTACCACAAGATATTGGCAACTTATCAACCAGCCTCAGGTATCTATCCTTTTCTCAAAA CAAAATATATGGAAATATTCCAAGCAGGATTCAATACCTTGTTAACTTGGAGGGGCTATCTGCATATAATAATAAGCTATCTGGTCCAATCCCATTCAGC TTTGGAAACTTTAAGTCTCTAATGGGGTTGCATTTGTATAACGATGAAATTTTCGGATACATTCCAACTTCGATAGGAAACTTGACAGAATTGCTTCATC TCGATATTAATAATAACAATCTTGAGAGTGAAATTGCTGCTTCTATGAAGAATTGTCAAAGATTGTTATATTTGGACCTTTCTAACAACAATCTTACAAA TCATGAGCCTTACCTCCTTGACAATTGTCTTAACTTATCTAACAATCGATTCACGGGTGCTCTTCCCTTTGAGGTGGGGAACCTAAAAAACTTGGACAAT TTGGATCTATCTCGTAATATGTTGTCAGGTAATATCACAAATAGTTTGGGTAGTTGTACCAGTTTAGTGTCCCTGTACTTGGAAGGAAATCATCTACAAG GTGTCATTCCTTCTTCGTTGAAGTCATCAAGAGGTATTCAAAAATTGGATCTCTCTGCCAATAACTTATTTGGTCAAATTCCAAAATTCTTAAAACTTAT GAACATTTCACGTTTTTTGAATTTGTCGCATAACAACTTTGATGGTCAAATACCAACACAATGA
AA sequence Show only first row Show all	>Lus10017028 pacid=23172983 polypeptide=Lus10017028 locus=Lus10017028.g ID=Lus10017028.BGIv1.0 annot-version=v1.0 MSKLQHFAVSANNLNGSIPLAFGNLSSLQMFYVFENQLSGRIPATLGRLKSIQLLAFQHNNLSDNQFTGSVPPSLSNVSSLVLLQIDSNNFTGNMPRMEV SNKLTWFTIFDNSLGSAKANDLMFLSSLTNATSLERMSIQRNNFRGNLPQDIGNLSTSLRYLSFSQNKIYGNIPSRIQYLVNLEGLSAYNNKLSGPIPFS FGNFKSLMGLHLYNDEIFGYIPTSIGNLTELLHLDINNNNLESEIAASMKNCQRLLYLDLSNNNLTNHEPYLLDNCLNLSNNRFTGALPFEVGNLKNLDN LDLSRNMLSGNITNSLGSCTSLVSLYLEGNHLQGVIPSSLKSSRGIQKLDLSANNLFGQIPKFLKLMNISRFLNLSHNNFDGQIPTQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47570			Leucine-rich repeat protein ki...		Lus10017028 [exp]	0	1
					Lus10042473 [exp]	7.3	0.7532
AT5G28010			Polyketide cyclase/dehydrase a...		Lus10008930 [exp]	14.6	0.7830
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10006245 [exp]	18.2	0.7786
AT5G05390		LAC12	laccase 12 (.1)		Lus10009841 [exp]	19.8	0.7642
AT2G36985		DVL16, ROT4	ROTUNDIFOLIA4, DEVIL 16, DVL f...		Lus10026526 [exp]	21.4	0.7314
					Lus10028788 [exp]	24.0	0.7613
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10039639 [exp]	31.5	0.7399
AT2G47460	MYB	PFG1, ATMYB12	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10002435 [exp]	62.2	0.7476
					Lus10002344 [exp]	63.4	0.7167
					Lus10005473 [exp]	63.6	0.7476

Compare expression of checked genes

Lus10017028 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.