Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03870 260 / 3e-83 Glutaredoxin family protein (.1) AT5G06470 140 / 6e-39 Glutaredoxin family protein (.1) AT5G01420 140 / 2e-37 Glutaredoxin family protein (.1) AT1G32760 137 / 8e-37 Glutaredoxin family protein (.1) AT1G64500 132 / 1e-34 Glutaredoxin family protein (.1) AT4G10630 131 / 2e-34 Glutaredoxin family protein (.1) AT5G13810 124 / 2e-32 Glutaredoxin family protein (.1) AT3G57070 124 / 2e-31 Glutaredoxin family protein (.1) AT2G41330 115 / 3e-28 Glutaredoxin family protein (.1) AT3G11773 105 / 7e-27 Thioredoxin superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021353 [exp] 675 / 0 AT5G03870 296 / 3e-97 Glutaredoxin family protein (.1) Lus10008270 [exp] 149 / 6e-41 AT4G10630 305 / 7e-103 Glutaredoxin family protein (.1) Lus10033238 [exp] 144 / 3e-39 AT4G10630 297 / 1e-99 Glutaredoxin family protein (.1) Lus10028742 [exp] 136 / 4e-36 AT5G01420 221 / 6e-69 Glutaredoxin family protein (.1) Lus10021255 [exp] 132 / 4e-36 AT5G06470 185 / 7e-59 Glutaredoxin family protein (.1) Lus10017547 [exp] 135 / 6e-36 AT5G01420 227 / 2e-71 Glutaredoxin family protein (.1) Lus10013597 [exp] 131 / 9e-36 AT5G06470 179 / 2e-56 Glutaredoxin family protein (.1) Lus10039537 [exp] 122 / 2e-31 AT5G13810 261 / 4e-87 Glutaredoxin family protein (.1) Lus10001669 [exp] 121 / 8e-31 AT5G39865 340 / 1e-115 Glutaredoxin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G212700 [exp] 402 / 3e-138 AT5G03870 332 / 2e-111 Glutaredoxin family protein (.1) Potri.016G079400 [exp] 386 / 4e-132 AT5G03870 301 / 2e-99 Glutaredoxin family protein (.1) Potri.010G243700 [exp] 145 / 2e-39 AT5G01420 213 / 3e-65 Glutaredoxin family protein (.1) Potri.008G016100 [exp] 145 / 5e-39 AT5G01420 209 / 2e-63 Glutaredoxin family protein (.1) Potri.001G448300 [exp] 141 / 3e-38 AT4G10630 285 / 6e-95 Glutaredoxin family protein (.1) Potri.006G201300 [exp] 138 / 1e-37 AT5G06470 213 / 1e-68 Glutaredoxin family protein (.1) Potri.016G067700 [exp] 138 / 2e-37 AT5G06470 206 / 4e-66 Glutaredoxin family protein (.1) Potri.003G141800 [exp] 135 / 1e-35 AT1G64500 315 / 8e-106 Glutaredoxin family protein (.1) Potri.006G041800 [exp] 131 / 5e-34 AT3G57070 340 / 3e-114 Glutaredoxin family protein (.1) Potri.001G026600 [exp] 127 / 1e-33 AT5G13810 312 / 1e-107 Glutaredoxin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00462 [flax] [poplar] Glutaredoxin Glutaredoxin
Representative CDS sequence Show only first row Show all	>Lus10017029 pacid=23173018 polypeptide=Lus10017029 locus=Lus10017029.g ID=Lus10017029.BGIv1.0 annot-version=v1.0 ATGGGTTGTGTTTCTTCGAAGCACGTCAAGAAGGAACTCCTCCGGGAGAAAACCATCCTCCACAACGGCAATGGCGACGGCCTCCACTCCCCTCACCTCA ACCACATCGTCTCCCTCACTTCCTCCACTTACGGCGCTCTCAAACTTGACTCCACCCTGCACCGCCACATCCTTCCGGCGGAGGAAGAGGAGGTGAAAGA GAAAGAGAAAGAGATAGCCGAATCCGAACAGGAAACACACTCGCCAGCGAGGCCCGAGGCCCCGGAGGTGATCAATGCAGTGGAATTGATGGAAGGACTA GAGGAAGGAGCACCGCCGCAAGCTCAATTGAAGAAGAGCAGCCCGAAATCCAGGCGGTTCCCAGATTTCGACGCGAGGAGTCCGTTGAAGTTCATGAACC AAATCGGGTCGCCCCGGAAGGCGAAGACTTTCGGCGGGAAGGAGAACAAAATCAAGCGATCTTCTTCGTCTCCTTCTGATTTCAATTTCACCCCTAGGCC AATCCTTAAACCTAACAACAACAATTGCAATCCGCATCCCAAGGCAGCGGTTCGGTTGAGTTACCCGGTCAAATCGTCTCCCAAACTCGCCAAATTCAAC ACCGAGTCGTCGTCATCCGACTTGCTATCTTCCAATTCTACTTCCAATTCGAATTCGAACTCAAAGAGGAGCTTCAACAGTCCGCTATTCGATCCAGACC TGGTGGCATTGTACGAGCGGGAGCTATCAGCGGAAGGAGATCAAGTGAAAAGGATCATCTCCTTGACTCCAAGCAAAGCCCTAAGATTAAAGAACTCGAA CGATTCAGAGTCGCTACTCAGCGAGTTCGAGGAGAAATGTCCTCCGGGAGGGGAAAACGGAGTCGTAGTGTACACGACGACGCTGCGAGGGATCAGGAGG ACGTACGAAGACTGCAACGCGGTGAGGTCGATCGTCGATTCTTACCACGTCCACGTGATCGAGCGGGACGTGTCGATGGATTCAGGGTTCAAGGAAGAAC TGAGGAGGCTGATGGGGACCAAAGAAGTGAAGGTTCCTCTGGTTTTCGTGAAAGGGAGGCTGATCGGCGGAGCTGCAACTGTGACGAAGCTTGACGAAGA AGGTAAATTGGAAGGGCTGTTTGGTGGGATTCAACGGAGGCTCAGCGGCGGATGCCGGAGATGCGGCGGGGTGAGGTTTGTGATGTGTAGGGAGTGTAAT GGGAGCTCCAAGGTGTTGGATGAGGAGATGAAGAAGAAGGTGAGGTGTGGTGGGTGTAATGAGAATGGATTGATTCAGTGCCCTGTTTGTTGCTGA
AA sequence Show only first row Show all	>Lus10017029 pacid=23173018 polypeptide=Lus10017029 locus=Lus10017029.g ID=Lus10017029.BGIv1.0 annot-version=v1.0 MGCVSSKHVKKELLREKTILHNGNGDGLHSPHLNHIVSLTSSTYGALKLDSTLHRHILPAEEEEVKEKEKEIAESEQETHSPARPEAPEVINAVELMEGL EEGAPPQAQLKKSSPKSRRFPDFDARSPLKFMNQIGSPRKAKTFGGKENKIKRSSSSPSDFNFTPRPILKPNNNNCNPHPKAAVRLSYPVKSSPKLAKFN TESSSSDLLSSNSTSNSNSNSKRSFNSPLFDPDLVALYERELSAEGDQVKRIISLTPSKALRLKNSNDSESLLSEFEEKCPPGGENGVVVYTTTLRGIRR TYEDCNAVRSIVDSYHVHVIERDVSMDSGFKEELRRLMGTKEVKVPLVFVKGRLIGGAATVTKLDEEGKLEGLFGGIQRRLSGGCRRCGGVRFVMCRECN GSSKVLDEEMKKKVRCGGCNENGLIQCPVCC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03870			Glutaredoxin family protein (....		Lus10017029 [exp]	0	1
AT4G17000			unknown protein		Lus10010744 [exp]	3.0	0.9664
AT5G03870			Glutaredoxin family protein (....		Lus10021353 [exp]	3.5	0.9581
AT5G01910			unknown protein		Lus10014179 [exp]	4.0	0.9575
AT4G32830		ATAUR1	ataurora1 (.1)		Lus10006033 [exp]	5.3	0.9614
AT5G01420			Glutaredoxin family protein (....		Lus10028742 [exp]	10.5	0.9429
AT1G23790			Plant protein of unknown funct...		Lus10013006 [exp]	10.6	0.9138
AT2G42110			unknown protein		Lus10016261 [exp]	10.7	0.9261
AT4G02800			unknown protein		Lus10014668 [exp]	11.0	0.9573
AT2G47850	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10034620 [exp]	11.4	0.9239
					Lus10001684 [exp]	13.5	0.9507

Compare expression of checked genes

Lus10017029 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.